PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

HSF

Protein Properties

Length: 210aa MW: 24228.4 Da PI: 7.4664

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.01G143500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	105.1	5.7e-33	35	131	2	102
HHHHHHHHHC.....TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS HSF_DNA-bind 2 Flkklyeile.....deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 Fl k+y++le e+ ++++sw+++g+ fvv+ ++ef++ Lp+yFkh+nf+SF+RQLn+YgFkk+++++ weFkh++F Glyma.01G143500.1.p 35 FLLKTYDLLEelgenIEDSTKIVSWNAEGTGFVVWSPSEFSELTLPRYFKHNNFSSFIRQLNTYGFKKISSKR---------WEFKHEKF 115 99******6665545899**********************************************999.........**** PP XXXXXXXXXXXXXXXX CS HSF_DNA-bind 87 kkgkkellekikrkks 102 ++g +++l +i rkk Glyma.01G143500.1.p 116 QRGCRHMLGEITRKKC 131 ***********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.1E-34	27	123	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	7.9E-41	31	129	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.63E-27	32	129	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	3.3E-29	35	129	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.1E-9	78	90	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	79	103	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.1E-9	91	103	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MANNYSVLEL NLGLGNNNVG GHAGQSPRQR CPAPFLLKTY DLLEELGENI EDSTKIVSWN 60 AEGTGFVVWS PSEFSELTLP RYFKHNNFSS FIRQLNTYGF KKISSKRWEF KHEKFQRGCR 120 HMLGEITRKK CEPSVFPAYL KSSSEENNAT SSTEENNDHQ LLMEENKNLK KERLELQVQI 180 DECKALEMKL LECLSQFMDT HQNKVRRLC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-15	21	129	19	129	Heat shock factor protein 1
5d5v_B	2e-15	21	129	19	129	Heat shock factor protein 1
5d5v_D	2e-15	21	129	19	129	Heat shock factor protein 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.01G143500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003516466.1	1e-155	heat stress transcription factor B-2a
Refseq	XP_028238608.1	1e-155	heat stress transcription factor B-2a-like
TrEMBL	A0A0B2S611	1e-154	A0A0B2S611_GLYSO; Heat stress transcription factor B-2a
TrEMBL	I1J7X9	1e-154	I1J7X9_SOYBN; Uncharacterized protein
STRING	GLYMA01G34490.1	1e-155	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11357	28	39
Representative plant	OGRP96	17	233

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62020.1	1e-35	heat shock transcription factor B2A

Link Out ? help Back to Top
Phytozome	Glyma.01G143500.1.p
Entrez Gene	100789792