PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.01G129700.2.p | ||||||||
Common Name | GLYMA_01G129700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 137aa MW: 15148.1 Da PI: 4.4701 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.3 | 0.00066 | 15 | 44 | 19 | 54 |
HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 19 afeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++++Lr++ +s ++Ka+i A++YI +L Glyma.01G129700.2.p 15 KLQQLRSVT------NSSAVNKASIIVDATRYIEEL 44 444444443......55579*************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.14E-5 | 8 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-5 | 10 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 137 aa Download sequence Send to blast |
MDSRRRGKNA SMQRKLQQLR SVTNSSAVNK ASIIVDATRY IEELKQKVDG LNSELGTAES 60 SISQDELPMV TVETLERGFL INVFSERNCP GMLGAILDAF EELGLDVLDA RVSCEDTFQL 120 EAVGGEVREY TRIYNV* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.13068 | 0.0 | hypocotyl| leaf| root| stem |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.01G129700.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT091483 | 0.0 | BT091483.1 Soybean clone JCVI-FLGm-8G23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001235904.1 | 5e-88 | uncharacterized protein LOC100500546 | ||||
Refseq | XP_028237522.1 | 5e-88 | uncharacterized protein LOC114416735 | ||||
TrEMBL | A0A445M2F9 | 7e-94 | A0A445M2F9_GLYSO; Uncharacterized protein (Fragment) | ||||
TrEMBL | I1J7L6 | 6e-94 | I1J7L6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G32130.1 | 2e-87 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G12860.1 | 3e-10 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.01G129700.2.p |