PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G123600.2.p
Common NameGLYMA_01G123600, LOC102660246
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 344aa    MW: 38590 Da    PI: 6.6053
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G123600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.65e-3262115255
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          prlrWtp+LH rFv+av++LGG+e+AtPk +l+lm+vkgL+++hvkSHLQ++R+
  Glyma.01G123600.2.p  62 PRLRWTPDLHLRFVHAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMFRS 115
                          8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.5E-3058116IPR009057Homeodomain-like
PROSITE profilePS5129412.03658118IPR017930Myb domain
SuperFamilySSF466891.27E-1460116IPR009057Homeodomain-like
TIGRFAMsTIGR015576.2E-2362117IPR006447Myb domain, plants
PfamPF002499.4E-963113IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MEERHGSQCS KTNPSNIDED EECESEANEE QSTQKNNGGS SSNSTVEENE KKIRPYVRSK  60
MPRLRWTPDL HLRFVHAVQR LGGQERATPK LVLQLMNVKG LSIAHVKSHL QMFRSKKVDD  120
RNQVFADYNN LVEIGDKNIY NISQLSMLQG YNPSQSSSFS YTNNYPCYGL GDASFGVYEK  180
LLQRPFDWSN AISREGSSIF GEQSKIREPK DEFLSFGAHD SLSARARLSH VDHIPPINIL  240
QQRAQKNTMP INPTTNPPEL KTLKRKASDT TLDLDLSLKL NSKIDDAEEG TLKNHEVDST  300
NLSLSLCSQS SSSNNPISRL IKEAQQDRCD EQGKMASTLD LAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-1863117458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-1863117458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-1863117357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-1863117357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-1863117357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-1863117357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-1863117458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-1863117458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-1863117458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-1863117458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-1863117458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-1863117458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.199230.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G123600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150427e-75AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006573380.10.0two-component response regulator ARR18
TrEMBLK7K3F70.0K7K3F7_SOYBN; Uncharacterized protein
STRINGGLYMA01G31044.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.12e-55G2-like family protein