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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.01G104200.1.p | ||||||||
Common Name | GLYMA_01G104200, LOC100805512 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | TALE | ||||||||
Protein Properties | Length: 610aa MW: 66885.9 Da PI: 7.0079 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.9 | 1.9e-09 | 408 | 445 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gL+ +qV++WF N R + Glyma.01G104200.1.p 408 FEHflHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVR 445 554459******************************88 PP | |||||||
2 | BELL | 103.4 | 1.6e-33 | 282 | 348 | 6 | 72 |
BELL 6 qkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +kk++Ll++l+eV++rY+qy++q+q+v+ sFe v gl +a+pY+slA ka+S+hFrcLk+ai++qi Glyma.01G104200.1.p 282 GRKKSRLLTMLDEVYRRYRQYYQQMQAVVTSFEYVSGLSNAAPYASLAIKAMSKHFRCLKNAITDQI 348 68****************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 5.5E-45 | 221 | 346 | IPR006563 | POX domain |
Pfam | PF07526 | 2.9E-37 | 226 | 345 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.098 | 386 | 449 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.4E-10 | 389 | 453 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.29E-12 | 389 | 450 | No hit | No description |
SuperFamily | SSF46689 | 4.11E-17 | 391 | 456 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-27 | 392 | 453 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.1E-18 | 406 | 445 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 610 aa Download sequence Send to blast |
MAEGFEAYHV PQQSRRDKLR VVATQNQHGL VEPSSLLPLY DPSSFISSDL LTSFHNGQKH 60 NLGCGMKEER ANLMMGFAAA AGGGGVMNNG SSSSCCSSNS SSVSYLDPES SLPLNQATIQ 120 VINNSNNNNM FLYQAQNLRE FDQGYNNNNN NNSEIMVFKP EPLSLSLSSH NNGVNLQRYG 180 SVVYGDKVGG VGGGGGGGVV IYGGSGLNEV SRCTVPMGPF TGYASILKGS RFLKPAQQLL 240 EELCDVGGVC AEKIVADASL MEPIPPESSS EDPLGDHGGD QGRKKSRLLT MLDEVYRRYR 300 QYYQQMQAVV TSFEYVSGLS NAAPYASLAI KAMSKHFRCL KNAITDQIQF ANKAHFHISN 360 RKDESPRFGN SDRGPYGQRP GFLEHQPVWR PQRGLPERAV TVLRAWLFEH FLHPYPTDTD 420 KLMLAKQTGL SRSQVSNWFI NARVRLWKPM VEEIHMLETR QAPKNLQKEE HCTNKPSDHL 480 PSDNSIVSEN PSTSTDKFQE APYKRAINEL PNIPVRTQEQ LNLPCTSNQP GGVGVSMGGS 540 ASNSVSLTLG LYQNHGIGLA EPFPLNAAQR FGVALETNNE GYVMSDYESQ NRHFGRDVIG 600 GQLLHDFVG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 2e-16 | 395 | 452 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 2e-16 | 395 | 452 | 1 | 58 | Homeobox protein Meis1 |
5bng_A | 2e-16 | 395 | 453 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 2e-16 | 395 | 453 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during late heart stage embryo in the SAM region between the two developing cotyledons. Expression is initially down-regulated in incipient floral primordia but a strong expression is subsequently detected in the central region of young floral primordia and the inner whorl of developing flowers. In fruit, is expressed in the replum of developing ovaries. {ECO:0000269|PubMed:12874117}. | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in stems, inflorescences and flowers. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.01G104200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095325 | 0.0 | BT095325.1 Soybean clone JCVI-FLGm-19C14 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003516903.1 | 0.0 | BEL1-like homeodomain protein 9 | ||||
Refseq | XP_028235392.1 | 0.0 | BEL1-like homeodomain protein 9 | ||||
Swissprot | Q9LZM8 | 1e-122 | BLH9_ARATH; BEL1-like homeodomain protein 9 | ||||
TrEMBL | A0A0B2P5Y2 | 0.0 | A0A0B2P5Y2_GLYSO; BEL1-like homeodomain protein 9 | ||||
TrEMBL | K7K312 | 0.0 | K7K312_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G25710.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2810 | 33 | 73 | Representative plant | OGRP133 | 16 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02030.1 | 1e-105 | TALE family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.01G104200.1.p |
Entrez Gene | 100805512 |