PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G103500.1.p
Common NameGLYMA_01G103500, LOC100803911
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 693aa    MW: 76961.6 Da    PI: 6.4327
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G103500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.75.3e-24126226198
                          EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                          f kvlt sd++++g +++ +k+a+e+     +++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   
  Glyma.01G103500.1.p 126 FSKVLTASDTSTHGGFSVLRKHATEClpvldMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL-- 213
                          88*****************************77777888*************************************************.. PP

                          SSSEE..EEEEE- CS
                   B3  86 grsefelvvkvfr 98 
                          + +++el+v+v+r
  Glyma.01G103500.1.p 214 RGDNGELRVGVRR 226
                          3489999****98 PP
2Auxin_resp98.21.2e-32252333183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsse..rrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          a+ha++t++ F v+Y+Pr+  s+F++ v+k+++a+++k+svGmRfkm+fe++ds+e  +r+sGt+vgv+d++p +W nSkWrsLk
  Glyma.01G103500.1.p 252 ASHAVATQTLFVVYYKPRT--SQFIIGVNKYLEAMDKKFSVGMRFKMRFEGDDSAEtdKRFSGTIVGVEDISP-HWVNSKWRSLK 333
                          789***************6..9********************************9833577**********99.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.01E-38116255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-39118241IPR015300DNA-binding pseudobarrel domain
CDDcd100176.14E-21124226No hitNo description
PfamPF023628.5E-22126226IPR003340B3 DNA binding domain
PROSITE profilePS5086312.421126228IPR003340B3 DNA binding domain
SMARTSM010198.0E-22126228IPR003340B3 DNA binding domain
PfamPF065071.5E-30252333IPR010525Auxin response factor
PfamPF023094.4E-7552617IPR033389AUX/IAA domain
PROSITE profilePS5174525.356581662IPR000270PB1 domain
SuperFamilySSF542772.22E-12583657No hitNo description
PfamPF023092.4E-6624665IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MLSRGAHGEV VGSGESGEDE LYEQQWKACA GPLVDVPRVG QRVFYFPQGH MEQLEASTNQ  60
ELNQRIPLLK LPTKILCRVV NVHLLAEQET DEVYAQITLV PESSQDEPTN ADPCTAEPPR  120
APVHSFSKVL TASDTSTHGG FSVLRKHATE CLPVLDMSQP TPTQELVAKD LHGYEWRFKH  180
IFRGQPRRHL LTTGWSTFVT SKRLVAGDTF VFLRGDNGEL RVGVRRLARQ ASSMPSSVIS  240
SQSMHLGVLA TASHAVATQT LFVVYYKPRT SQFIIGVNKY LEAMDKKFSV GMRFKMRFEG  300
DDSAETDKRF SGTIVGVEDI SPHWVNSKWR SLKVQWDEPA AVPRPDRVSP WEIEPFVASA  360
STPSVQPTMV KTKRPRPPSE TPDVDTTSVA SVFWDAGLQQ ADMAQKNVLA ESKWNDNTGT  420
WHHMQTDMNS KSNSGNTMLR NQTEGSWLSS PHSSCPSHLF QDVTDDSKIV SAWPVSKPHS  480
SKLNNDHVLD QVDKESKVET ATSYRLFGID LIDPSRNSPS VEKASAQAVN VPKVTTEGCT  540
STLSRTDAGH KSDVSMASSM ERKQEQLQVS PKDTQSKQIC RSRTKVQMQG VAVGRAVDLT  600
MLDGYGQLIN ELEDMFNIKG QLQHRNKWEI VFTDDEGDMM LVGDDPWPEF CNMVRRIFIC  660
SSQDVKKMSC GSKLPISSVE DGTVISSDTT ET*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-166133568355Auxin response factor 1
4ldw_A1e-166133568355Auxin response factor 1
4ldw_B1e-166133568355Auxin response factor 1
4ldx_A1e-166133568355Auxin response factor 1
4ldx_B1e-166133568355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1372376KRPRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.614020.0cotyledon| meristem| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G103500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006573317.10.0auxin response factor 9
RefseqXP_028235350.10.0auxin response factor 9-like
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A445M1700.0A0A445M170_GLYSO; Auxin response factor
TrEMBLK7K3100.0K7K310_SOYBN; Auxin response factor
STRINGGLYMA01G25270.40.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Representative plantOGRP5501582
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9