PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 304aa MW: 34212.9 Da PI: 8.0336

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.01G095500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.4	1.1e-12	100	151	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r +h +Er+RR+++N+ + Lr+l+P++ + ++ + a+i+ A+e++k+L+ Glyma.01G095500.1.p 100 QRITHITVERNRRKQMNEHLVVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 151 799*************************...9****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.66E-12	98	155	No hit	No description
SuperFamily	SSF47459	6.41E-16	98	167	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-12	98	154	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.322	99	150	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.4E-10	100	151	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.5E-9	105	156	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MALETLASNE FSNFIIYDTI SATPFSSHGS PEASFLESLV NYQEHDPAFD NSALRTRNHQ 60 AGEQESVGRR QNVVGVQVQG RKKRRRKPRV CKNKEEAETQ RITHITVERN RRKQMNEHLV 120 VLRSLMPESY VQRGDQASIV GGAIEFVKEL EHLLQSLEAR KLQLLHQEVV QANENTAISK 180 LMQPPFAQFF SYPQYTWSQT PNKYTSKTKA AIADIEVTLI ETHANLRILT RRNSPGQLTK 240 LVAGFQTLCL TVLHLNVTTI DPLVFYSISA KVEEGFQLCS VDGIATAIHH LLARIEEEAS 300 LCS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	80	86	RKKRRRK
2	80	87	RKKRRRKP
3	81	86	KKRRRK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.14186	0.0	cotyledon\| pod

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534, ECO:0000269\|PubMed:17088607}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.01G095500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT094313	0.0	BT094313.1 Soybean clone JCVI-FLGm-24B24 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028234574.1	0.0	transcription factor bHLH71-like
Swissprot	Q56XR0	4e-69	BH071_ARATH; Transcription factor bHLH71
TrEMBL	A0A0B2SJV0	0.0	A0A0B2SJV0_GLYSO; Transcription factor bHLH71
TrEMBL	I1KDQ1	0.0	I1KDQ1_SOYBN; Uncharacterized protein
STRING	GLYMA06G35330.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10644	31	38
Representative plant	OGRP253	15	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	3e-71	bHLH family protein

Link Out ? help Back to Top
Phytozome	Glyma.01G095500.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]