PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.01G084200.4.p

Common Name

GLYMA_01G084200, LOC100777181

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bZIP

Protein Properties

Length: 461aa MW: 51371.9 Da PI: 7.0005

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.01G084200.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.5	1.9e-10	178	213	7	42
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 7 errkqkNReAArrsRqRKkaeieeLeekvkeLeaeN 42 rr+++NReAAr+sR+RKka++++Le +L + Glyma.01G084200.4.p 178 LRRLAQNREAARKSRLRKKAYVQQLESSRVKLVQLE 213 59************************8655555444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.0E-6	172	241	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.3E-8	178	218	No hit	No description
CDD	cd14708	7.26E-23	178	228	No hit	No description
SuperFamily	SSF57959	7.5E-7	178	219	No hit	No description
PROSITE profile	PS50217	8.531	179	218	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	179	194	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.5E-7	179	214	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	9.4E-29	259	333	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence Send to blast
MPFSSQRHSR IFLPSHTSLF LFSLMKNMQG FKTAQPSSQQ LYCHSSFLLR GNDPNQNPAR 60 FSDLGEHHHF SAVFHQEDAA DLSSSSMFSV KSSNVVGGSN MQYGTLNTNV GHAEIGSSGG 120 GCMDTRQQLM YHKGVTMAAL PLGNGQVENW ADSGKADNSQ QTDDTSTDID TDDIIPTLRR 180 LAQNREAARK SRLRKKAYVQ QLESSRVKLV QLEQELQRAR QQGIFIATPG DQGHLAVGNG 240 ALAFDIDYAH WVDEHQRLLN DLRTAVNSQM SDSDLHILVD SVMAHYNELF RLKSLGTKAD 300 VLHIHNGMWK TPVERCFMWL GGFRSSELLK IIKNHLEPLT DQQLMGIYNL QQSSQQAEDA 360 LSQGLEALQQ SLVETLSSIS LGPTDSGNVV DYMGQMALAM GKLADLESFV RQADLLKQQT 420 LQQLQRILTT RQTARALLVQ TDYISRLRAL SSLWLARPRE *

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence Send to blast

MPFSSQRHSR IFLPSHTSLF LFSLMKNMQG FKTAQPSSQQ LYCHSSFLLR GNDPNQNPAR  60
FSDLGEHHHF SAVFHQEDAA DLSSSSMFSV KSSNVVGGSN MQYGTLNTNV GHAEIGSSGG  120
GCMDTRQQLM YHKGVTMAAL PLGNGQVENW ADSGKADNSQ QTDDTSTDID TDDIIPTLRR  180
LAQNREAARK SRLRKKAYVQ QLESSRVKLV QLEQELQRAR QQGIFIATPG DQGHLAVGNG  240
ALAFDIDYAH WVDEHQRLLN DLRTAVNSQM SDSDLHILVD SVMAHYNELF RLKSLGTKAD  300
VLHIHNGMWK TPVERCFMWL GGFRSSELLK IIKNHLEPLT DQQLMGIYNL QQSSQQAEDA  360
LSQGLEALQQ SLVETLSSIS LGPTDSGNVV DYMGQMALAM GKLADLESFV RQADLLKQQT  420
LQQLQRILTT RQTARALLVQ TDYISRLRAL SSLWLARPRE *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.01G084200.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014629587.1	0.0	transcription factor TGA2.2 isoform X2
Refseq	XP_028233787.1	0.0	transcription factor TGA2.2-like isoform X2
Swissprot	Q6IVC2	1e-160	TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBL	A0A0R0LDB6	0.0	A0A0R0LDB6_SOYBN; Uncharacterized protein
STRING	GLYMA01G21120.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	1e-114	bZIP family protein

Link Out ? help Back to Top
Phytozome	Glyma.01G084200.4.p
Entrez Gene	100777181

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]