PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ERF

Protein Properties

Length: 264aa MW: 28908.4 Da PI: 5.1488

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.01G074200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.4	7.3e-18	72	123	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + y+GVr + +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a+++ +g+ Glyma.01G074200.1.p 72 PSYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAVKGH 123 57***998.******843...6********************998775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.32E-31	72	132	No hit	No description
Pfam	PF00847	6.2E-13	72	123	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.143	73	130	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.9E-31	73	131	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.45E-21	73	131	IPR016177	DNA-binding domain
SMART	SM00380	3.3E-36	73	136	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.8E-10	74	85	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.8E-10	96	112	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MESDAGENLF GTFSSSTTSI TASSSSSPTS STTTSSNSCT KHDSKISPPQ NQNTPNSKKR 60 QRSDDNENKH HPSYRGVRMR AWGKWVSEIR EPRKKSRIWL GTYPTAEMAA RAHDVAALAV 120 KGHSAFLNFP NLAQDLPRPT TTSPKDIQAA AAKAATTTFF DDEIVNHCQA EKAEQNHGEQ 180 QASPSTLCMM DNSTEAEQIQ AEQASSTQES SSSHSTADEE TLFDLPDLFP DGNSGLFSYS 240 SCWHLCAVDS GFRLEEQFLW ENF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-17	71	131	12	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.01G074200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	1e-100	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003516798.1	0.0	ethylene-responsive transcription factor ERF034
Refseq	XP_028232761.1	0.0	ethylene-responsive transcription factor ERF034-like
Swissprot	Q8LBQ7	6e-66	ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBL	A0A0B2QV41	0.0	A0A0B2QV41_GLYSO; Ethylene-responsive transcription factor ERF034
TrEMBL	I1J6D4	0.0	I1J6D4_SOYBN; Uncharacterized protein
STRING	GLYMA01G13410.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF192	34	263
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44940.1	9e-48	ERF family protein

Link Out ? help Back to Top
Phytozome	Glyma.01G074200.1.p
Entrez Gene	100792964

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]