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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.01G066600.4.p | ||||||||
Common Name | GLYMA_01G066600, LOC100795416 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 336aa MW: 36903.9 Da PI: 7.3229 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 48.2 | 1.9e-15 | 46 | 95 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lr+l+P++ ++K + a+ L +++eY+++Lq Glyma.01G066600.4.p 46 RSKHSVTEQRRRSKINERFQILRDLIPHS----DQKRDTASFLLEVMEYVQYLQ 95 899*************************9....8*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.23E-18 | 42 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.7E-22 | 43 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.618 | 44 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.7E-13 | 46 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.20E-14 | 46 | 99 | No hit | No description |
SMART | SM00353 | 1.6E-11 | 50 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MRAGKGSQEE DEYEEEEFGS SKKQGTSSAP NANKDGKAID KASAIRSKHS VTEQRRRSKI 60 NERFQILRDL IPHSDQKRDT ASFLLEVMEY VQYLQEKVQK YEGSYQGWGQ EPLKLMPWRN 120 SHWRVQSFAG QPTAVKNGLG PVSPFPVKFD ESNASISPTM LSGTQNTIDP YQSRDIVNKT 180 AERQPDLVNK GMPLPLAMHA NMSVPVRSDG VLAHPLHGTV SDPQSTECPT TSEPQNQQDE 240 FTVEGGTISI SSAYSQGLLN NLTQALQSAG LDLSQASISV QINLGKRGNK GLSCGTSSPK 300 HHDNPSSNNQ TIAHFRDAGS GEDSDQVQKR MKTYK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.64214 | 0.0 | cotyledon| hypocotyl| root| seed coat| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive brassinosteroid-signaling protein. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.01G066600.4.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093525 | 0.0 | BT093525.1 Soybean clone JCVI-FLGm-24O3 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001239754.1 | 0.0 | uncharacterized protein LOC100795416 | ||||
Refseq | XP_028232269.1 | 0.0 | transcription factor BIM2-like isoform X2 | ||||
Swissprot | Q9CAA4 | 1e-113 | BIM2_ARATH; Transcription factor BIM2 | ||||
TrEMBL | A0A0B2PEV8 | 0.0 | A0A0B2PEV8_GLYSO; Transcription factor BIM2 | ||||
TrEMBL | C6T7U1 | 0.0 | C6T7U1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G09010.5 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 1e-110 | BES1-interacting Myc-like protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.01G066600.4.p |
Entrez Gene | 100795416 |
Publications ? help Back to Top | |||
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