PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.01G066600.1.p

Common Name

GLYMA_01G066600, LOC100795416

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 337aa MW: 36974.9 Da PI: 7.3229

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.01G066600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48.2	1.9e-15	47	96	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lr+l+P++ ++K + a+ L +++eY+++Lq Glyma.01G066600.1.p 47 RSKHSVTEQRRRSKINERFQILRDLIPHS----DQKRDTASFLLEVMEYVQYLQ 96 899***********************9....8*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.37E-18	43	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.8E-22	44	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.618	45	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.17E-14	47	100	No hit	No description
Pfam	PF00010	8.8E-13	47	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-11	51	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MRAGKGSQEE DEYEEEEFGS SKKQGTSSAP NANKADGKAI DKASAIRSKH SVTEQRRRSK 60 INERFQILRD LIPHSDQKRD TASFLLEVME YVQYLQEKVQ KYEGSYQGWG QEPLKLMPWR 120 NSHWRVQSFA GQPTAVKNGL GPVSPFPVKF DESNASISPT MLSGTQNTID PYQSRDIVNK 180 TAERQPDLVN KGMPLPLAMH ANMSVPVRSD GVLAHPLHGT VSDPQSTECP TTSEPQNQQD 240 EFTVEGGTIS ISSAYSQGLL NNLTQALQSA GLDLSQASIS VQINLGKRGN KGLSCGTSSP 300 KHHDNPSSNN QTIAHFRDAG SGEDSDQVQK RMKTYK*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.64214	0.0	cotyledon\| hypocotyl\| root\| seed coat\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.01G066600.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT093525	0.0	BT093525.1 Soybean clone JCVI-FLGm-24O3 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006572868.1	0.0	uncharacterized protein LOC100795416 isoform X1
Refseq	XP_028232261.1	0.0	transcription factor BIM2-like isoform X1
Swissprot	Q9CAA4	1e-112	BIM2_ARATH; Transcription factor BIM2
TrEMBL	I1J664	0.0	I1J664_SOYBN; Uncharacterized protein
STRING	GLYMA01G09010.5	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1730	33	82
Representative plant	OGRP1360	17	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	1e-109	BES1-interacting Myc-like protein 2

Link Out ? help Back to Top
Phytozome	Glyma.01G066600.1.p
Entrez Gene	100795416

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]