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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.01G064200.3.p | ||||||||
Common Name | LOC100819745 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 212aa MW: 24681.3 Da PI: 10.0218 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.4 | 6.1e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+ey++ Glyma.01G064200.3.p 9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSHKGKLFEYAT 59 79***********************************************86 PP | |||||||
2 | K-box | 108.9 | 5.6e-36 | 75 | 174 | 1 | 100 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 y++++ ++++++++ +++ e+++Lk++i+ Lqr++Rh++GedL s+slkeLq+LeqqL++++k+iR+++n+l++++i+elqkkek++qe+ Glyma.01G064200.3.p 75 YAERQLVANDSETQGNWTIEYTRLKAKIDLLQRNHRHYMGEDLASMSLKELQSLEQQLDTAIKNIRTRRNDLMYASISELQKKEKMIQEQ 164 567788888899999*************************************************************************** PP K-box 91 nkaLrkklee 100 n+ L kk++e Glyma.01G064200.3.p 165 NNILAKKIKE 174 *******987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.702 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.9E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.06E-33 | 2 | 92 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.75E-40 | 2 | 79 | No hit | No description |
PRINTS | PR00404 | 7.1E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.2E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.0E-29 | 85 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.498 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MGRGKVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFSH KGKLFEYATD 60 SCMEKILERH ERYAYAERQL VANDSETQGN WTIEYTRLKA KIDLLQRNHR HYMGEDLASM 120 SLKELQSLEQ QLDTAIKNIR TRRNDLMYAS ISELQKKEKM IQEQNNILAK KIKEKEQAVA 180 QQAAQWEQPN YRVDTSFMPQ QQPLRTSLNI G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 6e-22 | 1 | 73 | 1 | 72 | MEF2C |
5f28_B | 6e-22 | 1 | 73 | 1 | 72 | MEF2C |
5f28_C | 6e-22 | 1 | 73 | 1 | 72 | MEF2C |
5f28_D | 6e-22 | 1 | 73 | 1 | 72 | MEF2C |
6byy_A | 5e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 5e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 5e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 5e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 6e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 6e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 6e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 6e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.01G064200.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095362 | 0.0 | BT095362.1 Soybean clone JCVI-FLGm-14L12 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003516454.1 | 1e-155 | truncated transcription factor CAULIFLOWER A | ||||
Refseq | XP_028232021.1 | 1e-155 | truncated transcription factor CAULIFLOWER A-like | ||||
Swissprot | Q6E6S7 | 1e-113 | AP1_VITVI; Agamous-like MADS-box protein AP1 | ||||
TrEMBL | A0A368UIL8 | 1e-155 | A0A368UIL8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G08150.1 | 1e-154 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 9e-91 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.01G064200.3.p |
Entrez Gene | 100819745 |
Publications ? help Back to Top | |||
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