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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.01G050000.1.p | ||||||||
Common Name | GLYMA_01G050000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 386aa MW: 43973.9 Da PI: 8.5332 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 45.1 | 1.3e-14 | 9 | 53 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en+ t++kR+n i+KKA EL +LC++ + +++fs++gk Glyma.01G050000.1.p 9 KRMENTNGLLATYAKRKNRIMKKAAELAILCGVYIILLMFSPSGK 53 56778878889********************************97 PP | |||||||
2 | K-box | 16.9 | 2.6e-07 | 116 | 154 | 45 | 83 |
K-box 45 sLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 s s+++L q+e+ L++sl++iRs+K+++ +++ lq Glyma.01G050000.1.p 116 SNSVEQLGQMENSLKESLNQIRSHKENIQKQEFASLQCN 154 447899*********************999999888865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 19.357 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.5E-19 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.89E-20 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-10 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.2E-14 | 10 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-10 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-10 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MGRVKLKIKR MENTNGLLAT YAKRKNRIMK KAAELAILCG VYIILLMFSP SGKPSLCRGK 60 HNNFKGIITK FSQLTPQERE KSNLESLEVL KKTFKKLDHD VNIQDFFGYW TDLGTSNSVE 120 QLGQMENSLK ESLNQIRSHK ENIQKQEFAS LQCNNQFNEM HVPFRMDVQQ HLQPLSWITN 180 GDNQNLVLSE DSNLLLHEVC GSTSYSFRSY ANDHGSSTKT HISISKQENG ILSDLLQFPY 240 LPNNFNLWND TKVQLTPEMK PNENHVDYNV NGTIEAARTE YDSNHQGWTS TSGPCVIHAL 300 MHITYKAGTA QGTSLSSHSL RLYTSLSVKA SSLINFLNNH YYFSNTEDDV NIKEAMEDLN 360 YIPKQLFWKC IGIPKIYLGI TYSRI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.01G050000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027915928.1 | 1e-141 | agamous-like MADS-box protein AGL30 | ||||
TrEMBL | A0A0R0LDF2 | 0.0 | A0A0R0LDF2_SOYBN; Uncharacterized protein | ||||
STRING | XP_007158646.1 | 1e-139 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2750 | 33 | 70 |
Representative plant | OGRP5946 | 11 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03060.2 | 1e-64 | AGAMOUS-like 30 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.01G050000.1.p |