PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G050000.1.p
Common NameGLYMA_01G050000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 386aa    MW: 43973.9 Da    PI: 8.5332
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G050000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.11.3e-14953145
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                         kr en+     t++kR+n i+KKA EL +LC++ + +++fs++gk
  Glyma.01G050000.1.p  9 KRMENTNGLLATYAKRKNRIMKKAAELAILCGVYIILLMFSPSGK 53
                         56778878889********************************97 PP

2K-box16.92.6e-071161544583
                K-box  45 sLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                          s s+++L q+e+ L++sl++iRs+K+++ +++   lq  
  Glyma.01G050000.1.p 116 SNSVEQLGQMENSLKESLNQIRSHKENIQKQEFASLQCN 154
                          447899*********************999999888865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.357153IPR002100Transcription factor, MADS-box
SMARTSM004322.5E-19160IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.89E-20295IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-10323IPR002100Transcription factor, MADS-box
PfamPF003195.2E-141054IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MGRVKLKIKR MENTNGLLAT YAKRKNRIMK KAAELAILCG VYIILLMFSP SGKPSLCRGK  60
HNNFKGIITK FSQLTPQERE KSNLESLEVL KKTFKKLDHD VNIQDFFGYW TDLGTSNSVE  120
QLGQMENSLK ESLNQIRSHK ENIQKQEFAS LQCNNQFNEM HVPFRMDVQQ HLQPLSWITN  180
GDNQNLVLSE DSNLLLHEVC GSTSYSFRSY ANDHGSSTKT HISISKQENG ILSDLLQFPY  240
LPNNFNLWND TKVQLTPEMK PNENHVDYNV NGTIEAARTE YDSNHQGWTS TSGPCVIHAL  300
MHITYKAGTA QGTSLSSHSL RLYTSLSVKA SSLINFLNNH YYFSNTEDDV NIKEAMEDLN  360
YIPKQLFWKC IGIPKIYLGI TYSRI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G050000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027915928.11e-141agamous-like MADS-box protein AGL30
TrEMBLA0A0R0LDF20.0A0A0R0LDF2_SOYBN; Uncharacterized protein
STRINGXP_007158646.11e-139(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27503370
Representative plantOGRP59461119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.21e-64AGAMOUS-like 30