PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G043300.2.p
Common NameGLYMA_01G043300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 496aa    MW: 54591.9 Da    PI: 6.9741
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G043300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.87.3e-31182241159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          ++Dg++WrKYGqK+ kg+++pr+YYrCt + +Cpv+k+v+r+aed +++++tYeg+Hnh+
  Glyma.01G043300.2.p 182 MNDGCQWRKYGQKMAKGNPCPRAYYRCTASpSCPVRKQVQRCAEDMSILITTYEGTHNHP 241
                          58**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-32168243IPR003657WRKY domain
SuperFamilySSF1182901.57E-27175243IPR003657WRKY domain
PROSITE profilePS5081128.736177243IPR003657WRKY domain
SMARTSM007742.7E-37182242IPR003657WRKY domain
PfamPF031064.3E-27183241IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MCAFRMICLF LYMDQNLESA KGEKGETREE NKMLEFYGIL HHDKPDDATN AKGVFSHIEE  60
NEESELVSLS LGISISKGKP SKNEKMINNG IEKREDEDVH KRLVLGLDIN LDPVDQDELA  120
ANNSTPESSF GEGGKEDEPT EMWPPSKVSK TMKSEDKSEA SPHYQPKKTR VSIRARCDTQ  180
TMNDGCQWRK YGQKMAKGNP CPRAYYRCTA SPSCPVRKQV QRCAEDMSIL ITTYEGTHNH  240
PLPMSATAMA CTTSAAASML QSPSLSSQHG LVDSAISSII NSSAANYYNP NNALNFSTHQ  300
VSRPNQFYFS NSSISTLNSH PTITLDLTAP PTSSNSSFTH MPKYSSTNLN FSSGFSPLHS  360
SMPQSPWSSY NYFNSGTLSQ NRKHGGNYLL NTGNQNQPHS LGNLHQPIYM RSNTISQHSL  420
PDPIVAATKA ITSNPKFQSA LATALTTYVG NEAGGGRLRE NHVLESAELM NLKLCSENSI  480
GNSSIVQLPL LEQWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-21169243174WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G043300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-102AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014617466.10.0probable WRKY transcription factor 61
RefseqXP_028230555.10.0probable WRKY transcription factor 61
TrEMBLA0A0R0LDB80.0A0A0R0LDB8_SOYBN; Uncharacterized protein
STRINGGLYMA01G05050.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18860.11e-52WRKY DNA-binding protein 61