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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Glyma.01G041700.2.p |
| Common Name | GLYMA_01G041700 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 315aa MW: 36000.6 Da PI: 4.3226 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.01G041700.2.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 59.1 | 7.5e-19 | 55 | 108 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++t+eq++ Le+ Fe ++++ e++ +LAk+lgL+ rqV +WFqNrRa+ k
Glyma.01G041700.2.p 55 KKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFK 108
56689***********************************************98 PP
|
| 2 | HD-ZIP_I/II | 131 | 4.7e-42 | 55 | 146 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
kkrrl++eqv++LE++Fe e+kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlEkdy +Lk++yd+lk + e+L +e+++L++e+
Glyma.01G041700.2.p 55 KKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYGVLKASYDRLKGDYESLVQENDKLKAEV 144
9**************************************************************************************999 PP
HD-ZIP_I/II 92 ke 93
++
Glyma.01G041700.2.p 145 NS 146
75 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 315 aa
Download sequence Send
to blast |
MVVVVWWGWF SGSKSVVDFE NVNGSRVTDR PFFQALEKEE NCDEDYEGCF HQPGKKRRLT 60
SEQVQFLERN FEVENKLEPE RKVQLAKELG LQPRQVAIWF QNRRARFKTK QLEKDYGVLK 120
ASYDRLKGDY ESLVQENDKL KAEVNSLESK LILRDKEKEE NSDDKSSPDD AVNSSPHNNK 180
EPIMDLLISK NATTSENGTE VSTLPLPIMV TCKQEDANSA KSDVLDSDSP HCTDYGNHPS 240
SFVEPADSSH AFEPEDHSED FSQDEEDNLS ENFLTLPSSC CLPKVEEPCY DDPPENSCNF 300
GFHVEDQTFC FWPY*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 102 | 110 | RRARFKTKQ |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF184278 | 0.0 | AF184278.1 Glycine max homeodomain-leucine zipper protein 57 (Hdl57) mRNA, complete cds. |
| GenBank | BT094197 | 0.0 | BT094197.1 Soybean clone JCVI-FLGm-24N17 unknown mRNA. |
