PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G029300.1.p
Common NameGLYMA_01G029300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family YABBY
Protein Properties Length: 265aa    MW: 29605.6 Da    PI: 5.3492
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G029300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY198.33.2e-61542102166
                YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnve 87 
                          ++f+ +eq+Cyv+C+fC til+vsvPs+sl++vvtv+CGhCts+lsvn++kas    +lla+ shl+         ++ ++e++ +++ +
  Glyma.01G029300.1.p  54 HLFDLPEQICYVECGFCATILMVSVPSSSLSMVVTVKCGHCTSVLSVNMMKASfvpfHLLASLSHLE--------PKESSSEQDANKTLK 135
                          7899**********************************************99977778888888843........333334444443333 PP

                YABBY  88 keesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166
                          + ++as  + s   + +e++ +p    v++PPekrqr Psayn+fikeei+r+ka+nPd++hreafs+aaknWa fP+ 
  Glyma.01G029300.1.p 136 R-HNASMMTYS---DCEEEDAIPMSNVVNKPPEKRQRTPSAYNCFIKEEIKRLKAENPDMAHREAFSTAAKNWANFPPT 210
                          3.333333333...45667778877889*************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.8E-6159212IPR006780YABBY protein
SuperFamilySSF470951.22E-9157211IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.7E-6160211IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MMIDYECPSS TINASLCQKN YNFISLSLLS LPLSHTHSLT YKLQIQTDMS TLNHLFDLPE  60
QICYVECGFC ATILMVSVPS SSLSMVVTVK CGHCTSVLSV NMMKASFVPF HLLASLSHLE  120
PKESSSEQDA NKTLKRHNAS MMTYSDCEEE DAIPMSNVVN KPPEKRQRTP SAYNCFIKEE  180
IKRLKAENPD MAHREAFSTA AKNWANFPPT QCKEDEESCS SQTDQHVDLD SQVDPNAVVN  240
EEEGQGLRGR KVPKNSILER TPFE*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First detected in a group of around 15 epidermal cells on the abaxial half of each ovule primordium (chalaza, outer integument initiation sites). Later present in the outer cell layer of the outer integument on the abaxial side of the ovule primordium. Confined to the chalazal end of the integument and disappears after anthesis. Also present in embryos at the globular stage. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}.
Functional Description ? help Back to Top
Source Description
UniProtEssential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G029300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-54AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006573032.11e-161axial regulator YABBY 4 isoform X2
SwissprotQ9LDT31e-71YAB4_ARATH; Axial regulator YABBY 4
TrEMBLK7K1G30.0K7K1G3_SOYBN; Uncharacterized protein
STRINGGLYMA01G03580.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61442852
Representative plantOGRP9612712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.17e-62YABBY family protein
Publications ? help Back to Top
  1. Lora J,Hormaza JI,Herrero M
    Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
    New Phytol., 2015. 208(2): p. 584-95
    [PMID:25991552]
  2. Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
    Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
    BMC Plant Biol., 2016. 16(1): p. 143
    [PMID:27350128]
  3. Simon MK,Skinner DJ,Gallagher TL,Gasser CS
    Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors.
    Genetics, 2017. 207(4): p. 1489-1500
    [PMID:28971961]