PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G025000.1.p
Common NameGLYMA_01G025000, LOC100795063
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 255aa    MW: 27499.7 Da    PI: 7.1075
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G025000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer97.41.1e-3047102359
          ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                          ++rY+eClkNhA+ +Ggha+DGCgEfm++ g egt +alkCaAC CHRnFHR+e ++
  Glyma.01G025000.1.p  47 RARYRECLKNHAVGIGGHALDGCGEFMAA-GMEGTLDALKCAACSCHRNFHRKEADS 102
                          789*************************9.999********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.9E-2848100IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-2249102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.4E-284999IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.9795099IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.2E-30177246IPR009057Homeodomain-like
SuperFamilySSF466892.77E-17179246IPR009057Homeodomain-like
TIGRFAMsTIGR015651.6E-25188244IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MEFEDQEEQE EELCMGGGAG YDPTQMKIPV AAEPVRSSSS NGGGCGRARY RECLKNHAVG  60
IGGHALDGCG EFMAAGMEGT LDALKCAACS CHRNFHRKEA DSSAVVSLSG GDPYFLPHHH  120
HHHHPPPPQF SGYYRHPAGY LHMGGQLRSA VGGTLALPST SGGGGTQSTR EDQEDISNNP  180
SAGGTGSKKR FRTKFTVEQK DKMLELAEKL GWRIQKHDEA VVQAFCDETG VKRHVLKVWM  240
HNNKHTLVCY NGGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-261872461675ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.237230.0cotyledon
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G025000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006573021.10.0zinc-finger homeodomain protein 1 isoform X2
RefseqXP_028228760.10.0zinc-finger homeodomain protein 1-like
SwissprotQ6YXH55e-76ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLA0A445LXX10.0A0A445LXX1_GLYSO; Zinc-finger homeodomain protein 1
TrEMBLI1J5270.0I1J527_SOYBN; Uncharacterized protein
STRINGGLYMA01G03060.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-62homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]