PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G023800.1.p
Common NameGLYMA_01G023800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 486aa    MW: 54354 Da    PI: 9.3525
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G023800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.99.8e-10323369354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          ++h+e+E+rRR riN  +e+Lr +lP+        K +Ka++L ++++ +k+L
  Glyma.01G023800.1.p 323 KKHSEAEKRRRMRINGQYETLRNILPNiI------KKDKASVLAETIKQVKEL 369
                          68*************************55......999********9998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465654.06E-949122IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1102.1E-852120IPR001623DnaJ domain
PfamPF002268.4E-755119IPR001623DnaJ domain
PROSITE profilePS5007611.44255122IPR001623DnaJ domain
CDDcd062571.07E-455110IPR001623DnaJ domain
PROSITE profilePS5088814.272320369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.07E-8323374No hitNo description
PfamPF000105.6E-7323369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-12324381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-12324381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-8326375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550211.83E-5411460No hitNo description
CDDcd048731.62E-4413461No hitNo description
Gene3DG3DSA:3.30.70.2606.8E-5413470No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MDPLRGSEPE NPIATCLSML SLRRFSACRD FARRLPPSDS VPRVLAVADV LSAADFYSVL  60
QLRPSDGGNR DLARRQYAKL ALLLDPTNPD KLPFSDEALA RVQNAWHVLS HPERRALHDR  120
EQNANLNPNP MTASFWTACP YCWGLFEYEK RYEDRALLCH VCGKAFQGVP VKPPTKTGDA  180
VMEGEELRQY YSCEASVPLM CYEVMGNNVL GGQNAAQYVY ISDDNDNNDG GFVRNEGLQG  240
SGEKRRMRVK TVANKEDGEL EFTEGDDDVF VGLVQGMQHV RNYYNSDAQM IRGGFHQTFI  300
SRTYKTSFLK PRSKVEIKLL AAKKHSEAEK RRRMRINGQY ETLRNILPNI IKKDKASVLA  360
ETIKQVKELK KKVSKLEQDS SSNPSKDVVK FPNGTDKLNL ERCNNDEGIV KATLSCEDRL  420
GLMSSISGAL EQVKAKVVKA EIVSVGGRAR SVLWVQGLGN DGTGTLKSKL RVAMQKPPKM  480
QRFTQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G023800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006573937.10.0uncharacterized protein LOC102669365
TrEMBLA0A0R0LCY90.0A0A0R0LCY9_SOYBN; Uncharacterized protein
STRINGGLYMA01G02920.20.0(Glycine max)
STRINGAES960310.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126113032
Representative plantOGRP1491034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.11e-37bHLH family protein