PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G019700.3.p
Common NameGLYMA_01G019700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 314aa    MW: 35161.8 Da    PI: 4.4877
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G019700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.5e-12167210654
                          HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                           ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Glyma.01G019700.3.p 167 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 210
                          589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.491161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-15164221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9167210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.63E-5168214No hitNo description
Gene3DG3DSA:4.10.280.108.3E-15168221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048733.73E-4260301No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MELSQLGFLD ELLAPRKDTT WSNALSTGLN ELLLPSGWSF DSFDENQGLA TLNPSFAAFS  60
TPLDHRFECP YGSEAAYPFV DGFTLPELDS SYTRNDESAP LLPQEDNPSL EDEEFGFLGR  120
DNQSLEQAKI GCKIEEQVTE IPVFNMGLCG EKKPKSKKLE GQPSKNLMAE RRRRKRLNDR  180
LSMLRSIVPK ISKMDRTSIL GDTIDYMKEL LERIGKLQEE EIEEGTNQIN LLGISKELKP  240
NEVMVRNSPK FDVERRDQDT RISICCATKP GLLLSTVNTL EALGLEIHQC VISSFNDFSM  300
QASCSGVCNC NIF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169176ERRRRKRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.125030.0cotyledon| hypocotyl| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Broadly expressed. {ECO:0000269|PubMed:17088607}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G019700.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310970.0KT031097.1 Glycine max clone HN_CCL_167 bHLH transcription factor (Glyma01g02390.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006572984.10.0transcription factor bHLH93 isoform X2
RefseqXP_028228044.10.0transcription factor bHLH93-like isoform X2
SwissprotQ9LSL13e-71BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A445LXQ00.0A0A445LXQ0_GLYSO; Transcription factor bHLH93 isoform B
TrEMBLI1J4X10.0I1J4X1_SOYBN; Uncharacterized protein
STRINGGLYMA01G02390.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-73beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]