PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G015900.1.p
Common NameGLYMA_01G015900, LOC100815121
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 491aa    MW: 54072.4 Da    PI: 4.783
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G015900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.41.7e-36211122102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y+++ed++++ ++sws+++nsf+v+d+ +fa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F kg+k
  Glyma.01G015900.1.p  21 FLSKTYDMVEDPSTDAIVSWSATNNSFIVWDPPQFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLKGQK 101
                          9********************999*****************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++i r+k 
  Glyma.01G015900.1.p 102 HLLRSITRRKP 112
                          ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.8E-4014104IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.17E-3516110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.4E-6417110IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.0E-3221110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-202144IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-205971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-207284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MDGGGSTPAA PIPNANAPPP FLSKTYDMVE DPSTDAIVSW SATNNSFIVW DPPQFARDLL  60
PKYFKHNNFS SFVRQLNTYG FRKVDPDRWE FANEGFLKGQ KHLLRSITRR KPAHGQNHQQ  120
PQQPHGQSSS VGACVEVGKF GLEEEVERLK RDKNVLMQEL VRLRQQQQTT DNQLQTMVQR  180
LQGMEQRQQQ MMSFLAKAVQ SPGFFAQFVQ QQNDSNRRIT EVNKKRRLKQ EGMAETEHAA  240
TPDGQIIKYQ PMVNEAAKAM LRQIMKWDTS CVESLNKNSD NYVIGDASSS SSGMDSSSSS  300
GWTSGVTLKE VSPASVQSSH VPAATGTQGH VPSTVKPEIL SVPQAVASEK VMKDGAHDPP  360
SIPVSQADVM IPDLPPITEM VTGNILDIPE ENYMATETDE GYMDSSLGAG GSFPIDFEGI  420
SPDADIDDLL ANPIWDEILQ TSVPEDIDTN VAEASKGNEV QPMENGWGKT QHMDHLTEQM  480
GLLSSDAKRV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-2811108129Heat shock factor protein 1
5d5v_B1e-2811108129Heat shock factor protein 1
5d5v_D1e-2811108129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222229NKKRRLKQ
2223228KKRRLK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.458720.0hypocotyl| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G015900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001340351.10.0heat stress transcription factor 2
RefseqXP_014622410.10.0heat stress transcription factor Hsf-02 isoform X1
RefseqXP_028227554.10.0heat shock factor protein HSF8-like isoform X1
RefseqXP_028227562.10.0heat shock factor protein HSF8-like isoform X1
RefseqXP_028227570.10.0heat shock factor protein HSF8-like isoform X1
SwissprotQ9LQM71e-169HFA1D_ARATH; Heat stress transcription factor A-1d
TrEMBLA0A445LXK40.0A0A445LXK4_GLYSO; Heat stress transcription factor A-1d
TrEMBLI1J4T40.0I1J4T4_SOYBN; Uncharacterized protein
STRINGGLYMA01G01990.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18433169
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-124heat shock transcription factor A1D
Publications ? help Back to Top
  1. Higashi Y, et al.
    HsfA1d, a protein identified via FOX hunting using Thellungiella salsuginea cDNAs improves heat tolerance by regulating heat-stress-responsive gene expression.
    Mol Plant, 2013. 6(2): p. 411-22
    [PMID:23393165]
  2. Jung HS, et al.
    Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14474-9
    [PMID:23918368]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Ohama N, et al.
    The Transcriptional Cascade in the Heat Stress Response of Arabidopsis Is Strictly Regulated at the Level of Transcription Factor Expression.
    Plant Cell, 2016. 28(1): p. 181-201
    [PMID:26715648]