PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G013600.3.p
Common NameGLYMA_01G013600, LOC100101882
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 365aa    MW: 38920.5 Da    PI: 6.3259
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G013600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_167.71.9e-21259321163
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++eN +L++e+++++  +++l se+
  Glyma.01G013600.3.p 259 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEALKEENASLRSEVNRIRSDYEQLVSEN 321
                          89*********************************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.3E-12170IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.7E-5787226No hitNo description
Gene3DG3DSA:1.20.5.1703.4E-17252317No hitNo description
SMARTSM003384.3E-22259323IPR004827Basic-leucine zipper domain
PfamPF001701.1E-19259321IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.242261324IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.31E-11262318No hitNo description
CDDcd147023.58E-22264314No hitNo description
PROSITE patternPS000360266281IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MGSSEMDKTP KEKESKTPPP PPTSQEQSST TSTGTINPEW PGFQAYSPIP PHGFLASNPQ  60
AHPYMWGVQG NTPGSMEADG KPPEVKEKLP IKRSKGSLGS LNMITGKNNE HGKTPGTSAN  120
GIHSKSGESA SEGEGTSEGS DANSQNDSQL KSGGRQDSFE DEPSQNGSLA YTAQNGGLNT  180
PHTVVNQTMS IIPISAGGAP GAVPGPTTNL NIGMDYWGTP ASSNIPALGR KVPSTAVAGG  240
MVTVGSRDSA QSQLWLQDER ELKRQRRKQS NRESARRSRL RKQAECDELA QRAEALKEEN  300
ASLRSEVNRI RSDYEQLVSE NSALKERLGE LPANDDHHRS CRNDQHVGND TQQSGQTEAM  360
PGGQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275281RRSRLRK
2275282RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.218320.0leaf| pod| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G013600.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3697910.0AF369791.1 Phaseolus vulgaris bZIP transcription factor 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014621680.10.0bZIP transcription factor 16 isoform X5
SwissprotQ501B21e-116BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A0R0LAB90.0A0A0R0LAB9_SOYBN; Uncharacterized protein
STRINGGLYMA01G01740.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.15e-94basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Liao Y, et al.
    Soybean GmbZIP44, GmbZIP62 and GmbZIP78 genes function as negative regulator of ABA signaling and confer salt and freezing tolerance in transgenic Arabidopsis.
    Planta, 2008. 228(2): p. 225-40
    [PMID:18365246]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]