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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.01G005000.1.p | ||||||||
Common Name | GLYMA_01G005000, LOC100809761 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C3H | ||||||||
Protein Properties | Length: 351aa MW: 39011.8 Da PI: 7.2889 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.1 | 6.4e-08 | 130 | 151 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C+ f++ G C+ Gd C FaHg Glyma.01G005000.1.p 130 VACPEFRK-GNCRKGDACEFAHG 151 68******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 6.484 | 83 | 115 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.4E-6 | 126 | 152 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.197 | 127 | 153 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.2E-6 | 130 | 151 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.0E-5 | 132 | 153 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 14 | 161 | 184 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.643 | 161 | 185 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MMLGEHHRGN PTVLVPPWPA HDDPTAEMYS AFLTNDVNAG EYSPYHLQEA LTALQRFLPS 60 NETDADSDSS EAAQPDAAVD AYTCDHFRMY EFKVRRCARG RSHDWTECPY AHPGEKARRR 120 DPRRFHYSGV ACPEFRKGNC RKGDACEFAH GVFECWLHPA RYRTQPCKDG TSCRRRVCFF 180 AHTPEQLRVL PMQSPRSVAN SSESYDGSPM RQVSLSSAAA AAFMSSPAAS LSPPESPPSV 240 NEMVASLRNL QLGKMKSMPH NRNVSVGSPR GSVLRPGFLS LPTTPTQQPV RSGVKCFDVW 300 DESFEEEPVM ERVESGRGIR AKMFEKLSKE NSLDASASPP DLGWVSELVK * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.9001 | 0.0 | leaf| somatic embryo| vegetative bud |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.01G005000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003516267.1 | 0.0 | zinc finger CCCH domain-containing protein 20 | ||||
Swissprot | O82199 | 1e-132 | C3H20_ARATH; Zinc finger CCCH domain-containing protein 20 | ||||
TrEMBL | I1J4E8 | 0.0 | I1J4E8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G00820.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2056 | 31 | 76 |
Representative plant | OGRP1170 | 16 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 1e-133 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.01G005000.1.p |
Entrez Gene | 100809761 |
Publications ? help Back to Top | |||
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