PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G002100.1.p
Common NameGLYMA_01G002100, LOC100817780
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 1105aa    MW: 121958 Da    PI: 6.9892
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G002100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.71.9e-22114215199
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F  
  Glyma.01G002100.1.p 114 FCKQLTASDTSTHGGFSVPRRAAEKIfppldySMQPPA-QELVARDLHDTVWKFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI- 201
                          99*****************************9545444.38************************************************. PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                           ++++++l+++++r+
  Glyma.01G002100.1.p 202 -RDEKQQLLLGIRRA 215
                          .5688889****997 PP
2Auxin_resp117.51.1e-38240323183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aahaa+++s+F+v+YnPras+seFv++++k+ k+++ ++ s+GmRf+m+feteds +rr +Gtv+g+sdldpv+W+nS+Wr+L+
  Glyma.01G002100.1.p 240 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKSVYsHQPSLGMRFRMMFETEDSGTRRHMGTVTGISDLDPVQWKNSQWRNLQ 323
                          79********************************9989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.97E-43103243IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.5E-41106229IPR015300DNA-binding pseudobarrel domain
CDDcd100177.60E-18113205No hitNo description
SMARTSM010194.7E-22114216IPR003340B3 DNA binding domain
PROSITE profilePS5086311.843114216IPR003340B3 DNA binding domain
PfamPF023624.1E-20114215IPR003340B3 DNA binding domain
PfamPF065071.9E-33240323IPR010525Auxin response factor
PfamPF023093.6E-69911077IPR033389AUX/IAA domain
PROSITE profilePS5174527.1479921076IPR000270PB1 domain
SuperFamilySSF542778.63E-610051070No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1105 aa     Download sequence    Send to blast
MKKKSSIKAE LWHACAGPLV KLPPSGTHVI YFPQGHSEQV SASLNRDVHS QIPNYPNLPS  60
KLLCLLHTLT LHADPQTDQV YAQITLQPLP SFDKDALLRS DLALESTKPP PDFFCKQLTA  120
SDTSTHGGFS VPRRAAEKIF PPLDYSMQPP AQELVARDLH DTVWKFRHIY RGQPKRHLLT  180
TGWSLFVSGK RLFAGDSVLF IRDEKQQLLL GIRRANRQPT NISSSVLSSD SMHIGILAAA  240
AHAAANNSPF TVFYNPRASP SEFVIPLAKY YKSVYSHQPS LGMRFRMMFE TEDSGTRRHM  300
GTVTGISDLD PVQWKNSQWR NLQVGWDEST AGEKRSRVSI WEIEPVTAPF FICPPPFFRS  360
KRPRQPGMPD DELSDFDNIF KQTMPWPGDD MCVKDPQGLP GLNLAQWMNM QQNPALASSL  420
QPNYAPSLSG SILQNIPGPD ISHQLGFSAP QISQSNNVAL NTQRLLQTAP QLDHLQKLPS  480
TSSTLGTVLP PQQQLGDITQ QSRQNLANQT IPQGQVQAQL VHPQNIVQTN NILQQQQPSS  540
QNHQLHRSLS QNPSQQQQQT IIGQNQHQNL IQSPMPDHVQ QLQMSDDQIQ LQLLQKLQQQ  600
KQTLLAQQTA LQHSTQLTQI QDRQRQLLDK THNLSRALTP GQVREIPPIF QNSLPKANSI  660
SNPITKANCQ SNIQFYQQPK LQQQQPGLLS EMPGHTALHP TTTTNQLSAA GSSILTGAGG  720
AGGAGQSVIT DEVLSCSTSP SANNCTNALP QLINSRFQRS TLVGDDMAQS AATILSSSAL  780
ETTSSNANML KDLQPKSEVK PSLNISKIQN QGHFAPQTYL NGNAAHTDCL DTSSSTTSVC  840
LSQSDAHMHQ NNNPLSYNPQ SLLFRDNNQD GEVQADARSN IPYANNIDSQ MGMPLNPDSL  900
STKGTLRLGK DLSNNFSSEG MLGNYEINRD AQQEPSSSMV SQTFGVPDMA FNSIDSTIDD  960
SNFLNSGPWA PPPAPPLPPL PPLPPAQFQR MRTYTKVYKR GAVGRSIDIT RYSGYEELKQ  1020
DLARRFGIEG QLEDRQRIGW KLVYVDHESD VLLLGDDPWE EFVNCVRCIK ILSPQEVQQM  1080
SLDGDFGNGG LPNQACSSSD GGDT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-161334447388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.268280.0cotyledon| epicotyl| somatic embryo| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G002100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517174.10.0auxin response factor 19 isoform X1
TrEMBLI1J4B00.0I1J4B0_SOYBN; Auxin response factor
STRINGGLYMA01G00510.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68233044
Representative plantOGRP41931125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19