PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G000600.1.p
Common NameGLYMA_01G000600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 814aa    MW: 92701.3 Da    PI: 6.4489
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G000600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR11002.5e-3170161291
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                          fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+  +++ +r+r+ tr+gCka+l vk++++gkw v+ ++ eHnHel
  Glyma.01G000600.1.p  70 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKASLSVKMQDSGKWIVSGFVREHNHEL 159
                          9***************************************998888545677889*********************************** PP

                 FAR1  90 ap 91 
                          +p
  Glyma.01G000600.1.p 160 VP 161
                          86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-2970161IPR004330FAR1 DNA binding domain
PfamPF105512.6E-32282374IPR018289MULE transposase domain
PfamPF044349.7E-12550596IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.029562598IPR007527Zinc finger, SWIM-type
SMARTSM005751.2E-9573600IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 814 aa     Download sequence    Send to blast
MDNEVEVLEF DIGLGGGEGE YDDDDGGGID EEELGVATGG GEIYLPEVDL LDLEPCEGME  60
FESEEAAKAF YNSYARRVGF STRVSSSRRS RRDGAIIQRQ FVCAKEGFRN LNEKRTKDRE  120
IKRPRTITRV GCKASLSVKM QDSGKWIVSG FVREHNHELV PPDQVHCLRS HRQISGAAKT  180
LIDTLQAAGM GPRRIMSALI KEYGGISKVG FTEVDCRNYM RNNRLRSLEG DIQLVLDYLR  240
QMHAENPNFF YAVQGDEDQS ITNVFWADPK ARMNYTFFGD TVTFDTTYRS NRYRLPFAFF  300
TGVNHHGQPV LFGCAFLINE SEASFVWLFK TWLMAMSGCP PVSITTDHDS AIRSAIIQVF  360
PETRHRFCKW HIFKKCQEKL SHIFLQYPNF EAEFHKCVNL TESTEEFKSC WSTLVDKYDL  420
RVHEWLQAIY SSCRQWVPVY LRDTFFAEMS ITQRSDSMNS YFDGYINAST NLSQFFKLYE  480
KALESRNEKE VRADYDTMNT LPVLRTPSPM EKQASELYTR KIFMRFQEEL VGTLALMASK  540
ADDDGEVITY HVAKFGEDHK GYCVKFNVLE MKATCSCQMF EFSGLLCRHV LAVFRVTNVL  600
TLPSHYILKR WTRNAKSNVI LEEHACDVYT YYLESHTVRY NTLRHEALKF VDEGARSAET  660
YDVAIDALQE AAKRVSQGIQ NEGKIPISNG KVRSHVLNDE SHANYTSGCQ EASLSQHMSK  720
NLTEQCLSQF FDSNGGDRYV AGPTGRGGCS GHNGGHGGHG RYSSVQVCRK FGHDASVCYH  780
CFDENCAYYV SESSFFSQSS TTSRMIWIIL ENL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.190260.0cotyledon| meristem| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G000600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028225725.10.0protein FAR1-RELATED SEQUENCE 5-like
SwissprotQ9SZL80.0FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A0R0LBI40.0A0A0R0LBI4_SOYBN; Uncharacterized protein
STRINGGLYMA01G00321.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.10.0FAR1-related sequence 5
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]