PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 103aa MW: 11462 Da PI: 8.2151

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_Sca138215G01	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	76.5	4.9e-24	1	64	36	99
DUF260 36 lFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +FGasnv+kll++l +++reda++sl+yeAear+rdPvyG+vg i+ lq+q+++l++el+++++ Gh_Sca138215G01 1 IFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAITFLQRQVQRLQKELDAANA 64 7**********************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.69	1	66	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.0E-22	1	63	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 103 aa Download sequence Send to blast
IFGASNVTKL LNELLPHQRE DAVNSLAYEA EARVRDPVYG CVGAITFLQR QVQRLQKELD 60 AANADLIRYA CNDIPTGLPQ VTGTSSVQPP LTPRNRLAEF NRR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-42	1	82	46	130	LOB family transfactor Ramosa2.1
5ly0_B	3e-42	1	82	46	130	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in a band of cells at the adaxial base of all lateral organs formed from the shoot apical meristem and at the base of lateral roots. {ECO:0000269\|PubMed:12068116}.

Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016748663.1	1e-69	PREDICTED: protein LATERAL ORGAN BOUNDARIES-like
Refseq	XP_016748664.1	1e-69	PREDICTED: protein LATERAL ORGAN BOUNDARIES-like
Refseq	XP_017605768.1	2e-69	PREDICTED: protein LATERAL ORGAN BOUNDARIES-like
Swissprot	Q9FML4	1e-41	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A1U8PEF1	3e-68	A0A1U8PEF1_GOSHI; protein LATERAL ORGAN BOUNDARIES-like
TrEMBL	A0A2P5WNI8	4e-68	A0A2P5WNI8_GOSBA; Uncharacterized protein
STRING	EOY20851	7e-59	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	6e-44	LBD family protein

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]