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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_Sca130119G01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NF-YB | ||||||||
Protein Properties | Length: 86aa MW: 9757.61 Da PI: 5.7315 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 71.2 | 1.8e-22 | 1 | 48 | 50 | 97 |
NF-YB 50 asdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 asdkc++e+rkt+ngdd++wal+ lGf++y++++ yl+kyre+e++k Gh_Sca130119G01 1 ASDKCRKENRKTVNGDDICWALGALGFDNYADAIVRYLHKYREVERDK 48 89********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 5.7E-21 | 1 | 79 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 9.38E-17 | 1 | 73 | IPR009072 | Histone-fold |
PRINTS | PR00615 | 1.2E-6 | 5 | 23 | No hit | No description |
PRINTS | PR00615 | 1.2E-6 | 24 | 42 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 86 aa Download sequence Send to blast |
ASDKCRKENR KTVNGDDICW ALGALGFDNY ADAIVRYLHK YREVERDKAT QNKATCISSQ 60 DKDEESSEDR SNQPPHQQAE APSTRV |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers, siliques and young rosettes. {ECO:0000269|PubMed:11250072}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ567167 | 4e-61 | AJ567167.1 Gossypium hirsutum microsatellite DNA mGhCIR221, clone CIR221. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016670149.1 | 4e-59 | PREDICTED: nuclear transcription factor Y subunit B-4-like | ||||
Swissprot | O04027 | 8e-24 | NFYB4_ARATH; Nuclear transcription factor Y subunit B-4 | ||||
TrEMBL | A0A1U8I387 | 9e-58 | A0A1U8I387_GOSHI; nuclear transcription factor Y subunit B-4-like | ||||
STRING | Gorai.013G205200.1 | 2e-58 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM255 | 28 | 229 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09030.1 | 2e-24 | nuclear factor Y, subunit B4 |
Publications ? help Back to Top | |||
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