PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_Sca114806G01
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 101aa    MW: 11520 Da    PI: 7.2588
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_Sca114806G01genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS69.28.2e-22394281374
             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaW 373
                      +r+ vEr++lg++i   +++  ++r+e  e+ ++W+e+l+++GF+pv++s  + +qaklll  ++ dgyrvee  ++ +vl Wk+r+L+s+S W
  Gh_Sca114806G01   3 ARALVERVILGPQIAGSLTQIYRNRNE--EESGRWSEWLDTMGFNPVSISFANHCQAKLLLGLFN-DGYRVEELaNNRVVLDWKSRRLLSASIW 93 
                      7899******************99766..556*********************************.******98477788************** PP

             GRAS 374 r 374
                      +
  Gh_Sca114806G01  94 T 94 
                      6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509859.057174IPR005202Transcription factor GRAS
PfamPF035142.8E-19394IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
CRARALVERV ILGPQIAGSL TQIYRNRNEE ESGRWSEWLD TMGFNPVSIS FANHCQAKLL  60
LGLFNDGYRV EELANNRVVL DWKSRRLLSA SIWTSPPDSD L
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots and leaves. {ECO:0000269|PubMed:15961668}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447096.11e-66PREDICTED: nodulation-signaling pathway 2 protein
RefseqXP_016687028.11e-66PREDICTED: nodulation-signaling pathway 2 protein-like
RefseqXP_016709430.11e-66PREDICTED: nodulation-signaling pathway 2 protein
SwissprotQ5NE242e-40NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A1U8JE972e-65A0A1U8JE97_GOSHI; nodulation-signaling pathway 2 protein-like
STRINGGorai.009G244200.14e-66(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-32GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]