PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_Sca040411G01

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 290aa MW: 33600.1 Da PI: 6.3719

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_Sca040411G01	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.3	4.4e-22	18	109	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++ +kk + +++r r++ r+gC+ak+ ++ke ++w v ++++ HnHel Gh_Sca040411G01 18 EYYGNFARKNGFSIRKERSRLSPQLG-IYKRDFVCYRSGFAPARKKLSGEHHRDRKSVRCGCDAKMYLSKEVidgVSQWFVVQFSNVHNHELL 109 59******************8888.****************9******************99867789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.3E-20	18	109	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.2E-8	241	290	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MVAPYVGMVF KTDDDAFEYY GNFARKNGFS IRKERSRLSP QLGIYKRDFV CYRSGFAPAR 60 KKLSGEHHRD RKSVRCGCDA KMYLSKEVID GVSQWFVVQF SNVHNHELLE DDQVRLLPAY 120 RKINEADQER ILLLSKAGFP IHRIVKVLEL EKGIQGGQLP FLERDVRNFV QNRKKVVQEN 180 DALLNEKREN DTMELLEACK ATKEADQDFV YDFTVDQNDK VENIAWSYGV AVNSYALFGD 240 VVYFDTTYRS ITYDMLFGAW FGIDNNGQPI FFGCVLLQDE TLRSFAWAIQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012451432.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X1
Refseq	XP_012451433.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X2
Refseq	XP_012451434.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X2
Refseq	XP_016683469.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X1
Refseq	XP_016683470.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X1
Refseq	XP_016683472.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X2
Refseq	XP_016683473.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X3
Swissprot	Q9LKR4	1e-151	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A0D2UH57	0.0	A0A0D2UH57_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8IZD3	0.0	A0A1U8IZD3_GOSHI; Uncharacterized protein
TrEMBL	A0A1U8J4A6	0.0	A0A1U8J4A6_GOSHI; Uncharacterized protein
TrEMBL	A0A1U8J5I7	0.0	A0A1U8J5I7_GOSHI; Uncharacterized protein
STRING	Gorai.010G189600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1765	26	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	1e-154	FAR1-related sequence 10

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]