PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_Sca018371G01

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 200aa MW: 22796.1 Da PI: 6.9498

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_Sca018371G01	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	53.2	3.9e-17	17	65	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k ien r + fskRr+gi KK +ELS+LC+ e++ iifs+ gk y + Gh_Sca018371G01 17 KIIENADDRLIAFSKRRTGIYKKISELSILCGGEILFIIFSPAGKPYSF 65 579*****************************************98877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	5.9E-23	9	68	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	23.142	9	69	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.7E-22	10	79	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-16	11	31	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.4E-19	19	65	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-16	31	46	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-16	46	67	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MASSDKKTKG KQKIEIKIIE NADDRLIAFS KRRTGIYKKI SELSILCGGE ILFIIFSPAG 60 KPYSFGHPSV ESVAKCFPNA GQHLEETIDA PVETYRKERI NLLVQDFTDV QDQLDVIKEK 120 QMEIGLAQRS HGTEIRHWWK APIDQLNVKE LYEQDERFAE FNKLISITRN KKIATISSMQ 180 APMDEDVPSS FPPIYGPNLQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016681297.1	1e-141	PREDICTED: agamous-like MADS-box protein AGL29
TrEMBL	A0A2P5RP37	1e-141	A0A2P5RP37_GOSBA; Uncharacterized protein
STRING	Gorai.010G132800.1	1e-132	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04100.1	7e-26	AGAMOUS-like 57