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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_Sca011646G01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C3H | ||||||||
Protein Properties | Length: 107aa MW: 11727.1 Da PI: 8.067 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.7 | 8.4e-08 | 32 | 53 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f+ tG+C+y d+Ck+ H+ Gh_Sca011646G01 32 VCNRFLNTGFCQYEDNCKYFHP 53 5******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.15 | 27 | 55 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.81E-8 | 28 | 58 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-7 | 32 | 60 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-5 | 32 | 53 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence Send to blast |
GLQHIRAKAQ WFHSQNAQDL YQTSVPPFSK GVCNRFLNTG FCQYEDNCKY FHPNNDSRTP 60 NPPLSTAPAG GVVGNGNGMA ISWGNLPPSL KPPPENGYPP LPFVDWG |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX590223 | 1e-46 | JX590223.1 Gossypium hirsutum clone NBRI_GE25093 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012463158.1 | 8e-70 | PREDICTED: zinc finger CCCH domain-containing protein 3-like isoform X1 | ||||
TrEMBL | A0A0D2TUE7 | 2e-68 | A0A0D2TUE7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G032200.1 | 3e-69 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10474 | 22 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26749.1 | 2e-25 | C3H family protein |