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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_Sca005232G01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 166aa MW: 19001.9 Da PI: 8.9124 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.4 | 0.00098 | 44 | 66 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C++ F++ L H +H Gh_Sca005232G01 44 FKCKTCNRQFTSFQALGGHRASH 66 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 11 | 0.0013 | 90 | 112 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs L H+r+H Gh_Sca005232G01 90 HECSICGLEFSIGQALGGHMRRH 112 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.95E-9 | 42 | 112 | No hit | No description |
Pfam | PF13912 | 4.4E-12 | 43 | 68 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.325 | 44 | 71 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.11 | 44 | 66 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 46 | 66 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.224 | 90 | 117 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.32 | 90 | 112 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 6.2E-10 | 90 | 114 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 92 | 112 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MKRSFSNREE EKNFALANYF ILLSQGRNMY ESTMNDTNLT CRVFKCKTCN RQFTSFQALG 60 GHRASHKKPK LMERDGGVLE NQPPAKPKMH ECSICGLEFS IGQALGGHMR RHRANLSEEN 120 HQEPLMSPIV KKSNKVWCLD LNLTPFENDL ELLKLAKPTL AIDCFL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012449034.1 | 1e-118 | PREDICTED: zinc finger protein ZAT11-like | ||||
TrEMBL | A0A2P5WK34 | 1e-121 | A0A2P5WK34_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.010G202400.1 | 1e-117 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM531 | 28 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 3e-38 | C2H2 family protein |