PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_Sca004925G02 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | G2-like | ||||||||
Protein Properties | Length: 484aa MW: 52891.2 Da PI: 6.1069 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.7 | 5.5e-33 | 254 | 308 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+Fveav++L G+ekAtPk +l+lm+v+gLt++hvkSHLQkYRl Gh_Sca004925G02 254 KPRMRWTPELHECFVEAVSKLDGPEKATPKGVLKLMNVEGLTIYHVKSHLQKYRL 308 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.456 | 251 | 311 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.96E-18 | 252 | 308 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.2E-31 | 253 | 309 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-25 | 254 | 309 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.1E-9 | 256 | 307 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.1E-20 | 345 | 391 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 484 aa Download sequence Send to blast |
MKVGISSKTI NHPSFVSVTQ SGPSKGIGES YPNAVSPIHN FPSRDLEGPS WLTGECSSLF 60 PLKKNQLNSG PNSPSSPSSH AKGAFSHSSV FCTSLYLSSS STSETQRQLG NFPFLPHPPT 120 CHQFISAVDS SKSPVVFTED LYNPYDVDHS EVVMKDLLNF PGDACDDGCF HGMHCERDNF 180 ILTEQVELHV LSDELDIAIN DHGENPRVEE IYESPQPSSK PTVGLTCNQN SASATPSMSA 240 AVSPALSGPA AVHKPRMRWT PELHECFVEA VSKLDGPEKA TPKGVLKLMN VEGLTIYHVK 300 SHLQKYRLAK YMPEKKEEKK TWSSGEKKAA LSIGESDGTK NGGTHITEAL QMQIEVQKQL 360 HEQLELQRML QLRIEEQARY LQKILEEQQK AGSALIPTLS LSAPADPPSQ SSELQQPFSP 420 SAVVAASQHS ESKTESSSSS LPSKHKGNGF SVNECKPESS LKRFRFEDKP ESAIDEAVVE 480 NPVQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-26 | 254 | 311 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-26 | 254 | 311 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-26 | 254 | 311 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-26 | 254 | 311 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-26 | 254 | 311 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-26 | 254 | 311 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-26 | 254 | 311 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-26 | 254 | 311 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.11405 | 0.0 | boll| stem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016749740.1 | 0.0 | PREDICTED: uncharacterized protein LOC107958474 | ||||
TrEMBL | A0A1U8PF00 | 0.0 | A0A1U8PF00_GOSHI; uncharacterized protein LOC107958474 | ||||
STRING | Gorai.009G120900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6786 | 27 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13040.2 | 9e-99 | G2-like family protein |