PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G2423
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 534aa    MW: 60894.6 Da    PI: 8.1578
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G2423genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.92e-07325366145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT+eE e+ ++ v+q G + W++   t+g  + + ++k+ w+
      Gh_D13G2423 325 KRPWTPEEYEIVKKFVEQNGRN-WRLLGDTLG--KHRHHVKDTWR 366
                      579*****************66.********9..67888998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-4250315IPR009057Homeodomain-like
SMARTSM007175.9E-5251322IPR001005SANT/Myb domain
PROSITE profilePS500906.609320368IPR017877Myb-like domain
SMARTSM007172.5324371IPR001005SANT/Myb domain
SuperFamilySSF466892.3E-5325385IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-8327377IPR009057Homeodomain-like
PfamPF139211.2E-10328385No hitNo description
PROSITE profilePS500907.039369437IPR017877Myb-like domain
SMARTSM007174373439IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-6378438IPR009057Homeodomain-like
PROSITE profilePS500907.259439492IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MESCKGGKKN TEQESSKVMN LENNGEAKRV GKDKHKDKDG TNAVGTVTGT LEHSKKESPK  60
AHKKSKDVVE EISMETCLGG KENAEKESSK VVNLGNNGEA EKVREDKHKR KNKDGIDAVA  120
TVTETFVHSK MQEPVETEVC EKQKKKKKLE KVNGNVADDI AAMSSTTDKK GTGKKNSAGN  180
ELERKKLRDI GGDDEAGNKR KKKKSKSVEN DTDQVENATL KEKSKKVSFS DQVEVFPSMD  240
DAKKDKEGFV KGNRFSKEED EIVMNAVADY IESHNLGDEG LNMVLNCGSH KEVRRCWNEI  300
QAAIPWRPVE SVYNRAHVLF ERDEKRPWTP EEYEIVKKFV EQNGRNWRLL GDTLGKHRHH  360
VKDTWRRISA NAKKGQWSQD EYQKLFDLVN LDLCMKATQE RKSKYGMLRD NICWTAIGNK  420
METRAFVSCC SKWYRNLTSP MVAEGLWADV DDYRMLDALS SLDACCMEDV NWDNILEHRS  480
GDLCRKRWSQ MVQRLGSNKN LSFAEQVDIL AERYRPDMIE ARETFDSKQP VDLP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183203RKKLRDIGGDDEAGNKRKKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.210450.0boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016672005.10.0PREDICTED: cyclin-D-binding Myb-like transcription factor 1
TrEMBLA0A1U8I1870.0A0A1U8I187_GOSHI; cyclin-D-binding Myb-like transcription factor 1
STRINGGorai.013G268300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63272537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-121MYB_related family protein