PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G2412
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 826aa    MW: 94170 Da    PI: 9.2777
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G2412genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA534.6e-17738771134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  C +C + +Tp+WR+gp g+ktLCnaCG++yr+ +
  Gh_D13G2412 738 CPHCEVMETPQWREGPIGPKTLCNACGVRYRSDR 771
                  9******************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114442.95334269IPR001148Alpha carbonic anhydrase
Gene3DG3DSA:3.10.200.101.5E-5834252IPR001148Alpha carbonic anhydrase
SuperFamilySSF510693.27E-6135253IPR001148Alpha carbonic anhydrase
PfamPF001941.4E-3536246IPR001148Alpha carbonic anhydrase
SMARTSM010575.0E-5736266IPR001148Alpha carbonic anhydrase
CDDcd031247.11E-8845246No hitNo description
PROSITE patternPS001620131147IPR018338Carbonic anhydrase, alpha-class, conserved site
PfamPF052122.6E-129252551IPR007877Protein of unknown function DUF707
SMARTSM004016.2E-14732782IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.765736768IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.4E-13736769IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577164.75E-13737794No hitNo description
CDDcd002026.72E-13737786No hitNo description
PROSITE patternPS003440738763IPR000679Zinc finger, GATA-type
PfamPF003206.4E-15738771IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006730Biological Processone-carbon metabolic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004089Molecular Functioncarbonate dehydratase activity
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 826 aa     Download sequence    Send to blast
MAKLQMKPLF CILFIVIILQ HSRPTKSQEV EDESEFSYSE NNERGPSRWG EIHEEWGACS  60
NGTMQSPIDM FNQRVQIVSH LGKLKRSYKP ANAALKNRGH DMMLRFDGEA GAIEINGTEY  120
ALQQCHWHSP SEHTINGRRF DLEAHLVHKS ADGKIAVIGI MYKIGRPDPF LLSLEEHLTA  180
ITDTTEAERA VGVMNPRGIK FGSRKYYRYI GSLTVPPCTE NVVWSFVQKV RTVTREQVRL  240
LRVAVHDKYI RRNPRGSKLL PPRINVPESD LHLRRLYGLP PLDLKRKPKY LAAFSVGIHQ  300
MNNIDACVKK FSEDFQIVLF HYDGKTTEWD QFEWSKKAIH VTASKQTKWW YAKRFLHPDV  360
VAAYEYIFIW DEDLGVEHFN ADRYIELVKK HGLEISQPGL GPNDIVTWEM TRRREGQEVH  420
KVSLERPGWC SDQHLPPCAA FVEIMAPVFS REAWRCVWYM IQNDLVHGWG LDFALRRCVE  480
PAHEKIGVVD SEWIIHKVIP SLVNQAMTPD SNNINFSKGV TKFGKSRMQE VRIRCKNEWS  540
IFQDRLANAD KAYHAQFGNG GNVIKDFAFP LYDNNGGYGG GGFSGGEEWD CNFQHLAGFC  600
GGDFLDDIIV ESLTFSCDGY SQQSSSTKAS YSKSTDVKGS SWFQTSSPVS VLDSRSSSSG  660
ANRIPINPNL SFQGKRCRTN RRRASTLNSP FTLPLVFSTF ITSQKPTRKR QKKKNPKLLS  720
GSSESNNSSS QQLVIRKCPH CEVMETPQWR EGPIGPKTLC NACGVRYRSD RLFPEYRPAG  780
SPTFIPSLHS NSHKVVEMRR KSQFAGDSNN IRVVNPTETS LRYQLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4twl_A4e-66332502219Dioscorin 5
4twl_B4e-66332502219Dioscorin 5
4twm_A4e-66332502219Dioscorin 5
4twm_B4e-66332502219Dioscorin 5
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.22e-34GATA transcription factor 11