PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D13G2273 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GRAS | ||||||||
Protein Properties | Length: 475aa MW: 52926.9 Da PI: 6.4525 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 455.2 | 4.2e-139 | 47 | 470 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lLl+cA++v++g+le+a+ +L+++selaspdgd+mqR+aayfteALa r+++++++l ka+++++ + +se++ +++lf+ev+P+lk ++l+ Gh_D13G2273 47 LIHLLLTCANHVATGSLENANIALEQISELASPDGDTMQRIAAYFTEALADRILKTWPGLHKAINSTRVV-DLVSEQALVRRLFFEVFPFLKAAFLLV 143 689*************************************************************999886.679999********************* PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 NqaI ea+ege+ vH+iD+d+ +++QW+aL++ L++Rpegpp+lRi g++ +ke l ++g+rL++ Ae+l++pf+fn+ v+ +ledl++e+L+v Gh_D13G2273 144 NQAIIEAMEGEKVVHVIDLDAAEPMQWIALIRGLSARPEGPPHLRISGIHV----RKEVLDQMGHRLSEEAEKLDIPFQFNP-VVGELEDLDVERLHV 236 ***************************************************....9**************************.7999*********** PP GRAS 197 kpgEalaVnlvlqlhrll..........................................................desvsles....erdevLklvk 232 k+gEa+a+++vl+lh+ll + s + d++L +++ Gh_D13G2273 237 KTGEAVAISSVLRLHSLLasddeplrkklplalknsngihlqralrmsqntlgellekdtvngyspspdsasssplS------SpvspKVDTFLTALR 328 **********************************************************************7654322......3334468******** PP GRAS 233 slsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330 +l Pk+vv++eq+++hn+++++er+le+l+ y+alfd+le++++r+s+er k+E++l+g+ei+n+++cegaer+erhe+lekW +rl++aGF +vpls Gh_D13G2273 329 GLLPKLVVITEQDSNHNGSTLMERLLESLHSYAALFDCLESTVSRASSERLKLEKMLFGNEIKNIISCEGAERKERHEKLEKWIQRLDSAGFCNVPLS 426 ************************************************************************************************** PP GRAS 331 ekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ + qak+ll+ ++ +gy+++ e+g+++++W+drp++svSaWr Gh_D13G2273 427 YYGMLQAKTLLQGYNCNGYKMKAENGCVMICWQDRPMFSVSAWR 470 *******************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 59.184 | 21 | 450 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-136 | 47 | 470 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 475 aa Download sequence Send to blast |
MSQNESSPLK SSSSSLQVFS MMSLSPSLGS SYPWLKELKS EERGLYLIHL LLTCANHVAT 60 GSLENANIAL EQISELASPD GDTMQRIAAY FTEALADRIL KTWPGLHKAI NSTRVVDLVS 120 EQALVRRLFF EVFPFLKAAF LLVNQAIIEA MEGEKVVHVI DLDAAEPMQW IALIRGLSAR 180 PEGPPHLRIS GIHVRKEVLD QMGHRLSEEA EKLDIPFQFN PVVGELEDLD VERLHVKTGE 240 AVAISSVLRL HSLLASDDEP LRKKLPLALK NSNGIHLQRA LRMSQNTLGE LLEKDTVNGY 300 SPSPDSASSS PLSSPVSPKV DTFLTALRGL LPKLVVITEQ DSNHNGSTLM ERLLESLHSY 360 AALFDCLEST VSRASSERLK LEKMLFGNEI KNIISCEGAE RKERHEKLEK WIQRLDSAGF 420 CNVPLSYYGM LQAKTLLQGY NCNGYKMKAE NGCVMICWQD RPMFSVSAWR CRNSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 5e-65 | 35 | 473 | 7 | 382 | Protein SCARECROW |
5b3h_A | 4e-65 | 35 | 473 | 6 | 381 | Protein SCARECROW |
5b3h_D | 4e-65 | 35 | 473 | 6 | 381 | Protein SCARECROW |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX615153 | 1e-168 | JX615153.1 Gossypium hirsutum clone NBRI_GE58996 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016734477.1 | 0.0 | PREDICTED: scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 0.0 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A1U8N5U0 | 0.0 | A0A1U8N5U0_GOSHI; scarecrow-like protein 3 | ||||
STRING | Gorai.013G252600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4098 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 0.0 | scarecrow-like 3 |
Publications ? help Back to Top | |||
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