PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G1915
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 163aa    MW: 18842 Da    PI: 10.6348
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G1915genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF31.81.8e-101150342
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                 i n+s r++t+ +R + + KK  EL +LC++e   ++ s+
  Gh_D13G1915 11 ITNDSARKTTYKRRTKCLVKKVRELTTLCGIEGFAVMNSP 50
                 89*****************************987777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.54149IPR002100Transcription factor, MADS-box
SMARTSM004324.1E-12161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-18395IPR002100Transcription factor, MADS-box
CDDcd002663.22E-18386No hitNo description
PfamPF003193.9E-111151IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MSRKKIKLAY ITNDSARKTT YKRRTKCLVK KVRELTTLCG IEGFAVMNSP DFGSQVEVWP  60
SLEDARRLLS DFKKLPLSKQ NKKMVNQESF LEQSLAKATQ QLRKLREKNR QKELKEVMFE  120
SLSGKGILQS LNAMDLDEVD LLVKQNLTDI DYRVRVLTKA SRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.125960.0boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2431012e-82AC243101.1 Gossypium arboreum clone GM203N05-jhe, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016667935.11e-115PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A1U8HPG61e-113A0A1U8HPG6_GOSHI; agamous-like MADS-box protein AGL80
STRINGGorai.013G210600.11e-114(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-44AGAMOUS-like 80