PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D13G1910

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 312aa MW: 35304.3 Da PI: 6.8101

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D13G1910	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00035	162	186	1	23
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 + C+ C+k ++ +++++H+++ H Gh_D13G1910 162 FYCELCNKQYKLAMEFEVHLSSydH 186 79*****************987555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00443	1.0E-13	64	110	IPR000467	G-patch domain
PROSITE profile	PS50174	16.374	66	112	IPR000467	G-patch domain
Pfam	PF01585	1.1E-12	67	108	IPR000467	G-patch domain
Pfam	PF12171	2.1E-5	162	189	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	164	186	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MDYRRYNSSQ GANLGTKQQI SEEQAYQDSL VEDLAEDFRL PINHKPTENV DLDNVQQATL 60 DTKLNSSNVG FRLLQKMGWK GKGLGKDEQA GIIEPIRSGI RDPKLGIGKQ EEDDFFTAEE 120 NIQRRKLDIE VEETEEHAKK REVLAEREQK IQTEVKEIRK VFYCELCNKQ YKLAMEFEVH 180 LSSYDHNHRK RFKEMREMHG SSSRDDRQKR EQQRQEREMA KFAQMAGARK QQQQESREES 240 GPATAPASSP APAPAPAPAP AIATALADQE QRKTLKFGFS SKSSSSKNAS GSAVKKPKVA 300 VASVFGNDSD DE

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.2012	0.0	boll\| ovule

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016667934.1	0.0	PREDICTED: G patch domain-containing protein 8-like
TrEMBL	A0A1U8HX48	0.0	A0A1U8HX48_GOSHI; G patch domain-containing protein 8-like
STRING	Gorai.013G210000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12667	5	6