![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_D13G1673 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | GRF | ||||||||
Protein Properties | Length: 331aa MW: 36134 Da PI: 8.33 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.5 | 6.4e-25 | 89 | 133 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ Gh_D13G1673 89 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 133 79****************************************986 PP | |||||||
2 | QLQ | 64.3 | 3.1e-22 | 27 | 63 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+FT +Q+q+L++Q+l++Ky++a++PvPp+L+++iqk Gh_D13G1673 27 SPFTVSQWQELEHQALIFKYMMAGLPVPPDLVLPIQK 63 89*********************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.1E-12 | 27 | 63 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 3.7E-16 | 28 | 62 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 24.498 | 28 | 63 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.762 | 89 | 133 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.8E-21 | 90 | 132 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 331 aa Download sequence Send to blast |
MNSGGGGGGG GAESAGVGMV AMRSSSSPFT VSQWQELEHQ ALIFKYMMAG LPVPPDLVLP 60 IQKSFESISQ RFFHHPTMGY CSFYGKKVDP EPGRCRRTDG KKWRCSKDAY PDSKYCERHM 120 HRGRNRSRKP VESQTMAQSL STVTSLTVSG STTSGGGTGT ASFQSLPLHA FGGTQVTALA 180 TGQSNYHVES IPYGIPRKDY RSQGIKPDAG GHSFISEALG SNRDTWPLMQ SRVSSFPQSK 240 SDGNPVLLND YPQHSFFSDF NSGETVKPEG QSLRPFFDEW PKTRDTWSAL EDDRSNQTSF 300 STTQLSISIP MASSDFSTTG SHSPHGEFQT P |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ghi.7107 | 0.0 | boll| ovule |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FQ382488 | 3e-46 | FQ382488.1 Vitis vinifera clone SS0ABG55YD19. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012463459.1 | 0.0 | PREDICTED: growth-regulating factor 4-like | ||||
Refseq | XP_016704987.1 | 0.0 | PREDICTED: growth-regulating factor 4-like | ||||
Swissprot | Q6AWY6 | 6e-86 | GRF3_ORYSJ; Growth-regulating factor 3 | ||||
TrEMBL | A0A0D2VCZ6 | 0.0 | A0A0D2VCZ6_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8KR92 | 0.0 | A0A1U8KR92_GOSHI; growth-regulating factor 4-like | ||||
STRING | Gorai.013G184200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14339 | 10 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13960.1 | 6e-46 | growth-regulating factor 5 |