PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D13G1541

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 162aa MW: 18405.4 Da PI: 10.5923

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D13G1541	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	43.3	4.6e-14	11	46	3	38
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevavi 38 i n+s r++t+ kR +g+ KK +EL +LC++e++ i Gh_D13G1541 11 ITNDSARKTTYKKRTKGLVKKVHELTTLCGIEACAI 46 89********************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	15.6	1	46	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.0E-16	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.86E-20	3	85	No hit	No description
PRINTS	PR00404	1.6E-7	3	23	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.92E-19	3	94	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.8E-14	11	46	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-7	23	38	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MSRKKIKLAY ITNDSARKTT YKKRTKGLVK KVHELTTLCG IEACAINSAD FDSQPEVWLS 60 HAGARCLLSE FKKLPLSKQN NKMVNQESFL EQSLAKATQH LRKLRKENRQ KELKNTMFQS 120 LNGKGILQSL NSMDLNELGP LVKQNLKDID DRVRVLTKAS CS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.12596	1e-173	boll

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269\|PubMed:16798889}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269\|PubMed:16798889, ECO:0000305\|PubMed:26462908}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243101	7e-55	AC243101.1 Gossypium arboreum clone GM203N05-jhe, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016704538.1	1e-116	PREDICTED: agamous-like MADS-box protein AGL80
Swissprot	Q9FJK3	1e-49	AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBL	A0A1U8KU57	1e-115	A0A1U8KU57_GOSHI; agamous-like MADS-box protein AGL80
TrEMBL	A0A2P5R886	1e-115	A0A2P5R886_GOSBA; Uncharacterized protein
STRING	Gorai.013G168300.1	1e-114	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM70	28	415

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	4e-52	AGAMOUS-like 80

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]