PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D13G1114

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 350aa MW: 38855.8 Da PI: 8.1711

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D13G1114	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.2	8.9e-34	45	99	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG++kAtPkt++++m+++gLtl+h+kSHLQkYRl Gh_D13G1114 45 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKIMGIPGLTLYHLKSHLQKYRL 99 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.904	42	102	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-31	43	100	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.88E-17	44	101	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.4E-23	45	100	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-9	47	98	IPR001005	SANT/Myb domain
Pfam	PF14379	3.1E-24	146	191	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MYHHHHHQGK NIQACLRTAI PDRHLLLQGG NGTGDSGLVL STDAKPRLKW TPDLHERFIE 60 AVNQLGGADK ATPKTVMKIM GIPGLTLYHL KSHLQKYRLS KNPHGQANNG SNKIGAVAMP 120 ADKMSEANGI QMNNSTVGPQ TNRGLQIGEA LQMQIEVQRR LHEQLEVQRH LQFRIEAQGK 180 YLQSVLEKAQ EMSNQCLDST LMDLKELQGL CHQKTKTNSI DSCLTSIEGS QKDQEIHNNG 240 ICLRPYSLVA EDPWLPQTGL KENKMVPSST GKIADRSSNG SDLSITVGLQ GDKGKGFNSN 300 SSRFSERKFN GRNEEDGLHY FATKLDLNVD EENDVASRCK QFDLNGLSWG

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MYHHHHHQGK NIQACLRTAI PDRHLLLQGG NGTGDSGLVL STDAKPRLKW TPDLHERFIE  60
AVNQLGGADK ATPKTVMKIM GIPGLTLYHL KSHLQKYRLS KNPHGQANNG SNKIGAVAMP  120
ADKMSEANGI QMNNSTVGPQ TNRGLQIGEA LQMQIEVQRR LHEQLEVQRH LQFRIEAQGK  180
YLQSVLEKAQ EMSNQCLDST LMDLKELQGL CHQKTKTNSI DSCLTSIEGS QKDQEIHNNG  240
ICLRPYSLVA EDPWLPQTGL KENKMVPSST GKIADRSSNG SDLSITVGLQ GDKGKGFNSN  300
SSRFSERKFN GRNEEDGLHY FATKLDLNVD EENDVASRCK QFDLNGLSWG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-22	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-22	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-22	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-22	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.11034	0.0	stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269\|PubMed:15923329}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX587315	1e-76	JX587315.1 Gossypium hirsutum clone NBRI_GE21375 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012463645.1	0.0	PREDICTED: uncharacterized protein LOC105783026
Swissprot	Q9SQQ9	1e-118	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A0D2VE81	0.0	A0A0D2VE81_GOSRA; Uncharacterized protein
STRING	Gorai.013G122900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3336	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-120	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]