PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G1103
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GeBP
Protein Properties Length: 464aa    MW: 51003.6 Da    PI: 4.8537
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G1103genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573113.41.4e-35162262297
       DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk.....spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 
                  lfqrlw++eDei lL+G++d+++++       + ++d+  fy+ +k++++++++k+qlveK+rrLKkK+++ ++k++sgke+sf+++hdq +fe+s+k
  Gh_D13G1103 162 LFQRLWTDEDEIELLKGFLDYTTSKTNsnsshHHHHDTALFYDLIKSKLQLDFNKNQLVEKLRRLKKKYRNVMNKINSGKEFSFKSPHDQATFEISRK 259
                  79*******************7766554544334459999********************************************************** PP

       DUF573  95 iWg 97 
                  iW 
  Gh_D13G1103 260 IWS 262
                  **7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.9E-32163262IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MGYEPHTGQT LTKLTSFLSP SPTRFFNQQN PREPLSFSTL SLMASEQYGA VFEESQDDDE  60
EPSSSGNDDV LNGHDEEDEE LLEEEEEEDF NSPSLLPQPI AAVVPSASIP AVPLAVPSST  120
VVTVASVPLG GSIPDSKRQR IDSAISEKKP PPPQQFDESR RLFQRLWTDE DEIELLKGFL  180
DYTTSKTNSN SSHHHHHDTA LFYDLIKSKL QLDFNKNQLV EKLRRLKKKY RNVMNKINSG  240
KEFSFKSPHD QATFEISRKI WSSSVGKVED NVLDYDENNI TPTTTTNINL LDESGEKKNL  300
TPKSAANKRR SRSKGGKLEE KRVLNDGFVI SNNNFNNRSD HDQGNVEGLG GGGGGAGGER  360
GNLTAVVEEA VKSCLTPVFK ELLGSLIGGG GGGGRGISGM AMNAMPLSFG GTLNFGGGVG  420
GNVEFMDERW RKQQILELEV YSKRLELVQD QIKVALEELR SIGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.9860.0boll| ovule| root| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5778191e-143JX577819.1 Gossypium hirsutum clone NBRI_GE9719 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012463707.10.0PREDICTED: mediator-associated protein 1-like
TrEMBLA0A0D2VCS10.0A0A0D2VCS1_GOSRA; Uncharacterized protein
STRINGGorai.013G121800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30982764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.13e-65DNA-binding storekeeper protein-related transcriptional regulator