PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G0744
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 561aa    MW: 61258.5 Da    PI: 6.1772
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G0744genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY962.5e-30257316159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  ++Dg++WrKYGqK  kg+++pr+YYrCt + +Cpv+k+v+r+++d +++++tYeg+Hnh+
  Gh_D13G0744 257 MNDGCQWRKYGQKIAKGNPCPRAYYRCTLSpTCPVRKQVQRCSDDMSILITTYEGNHNHP 316
                  58**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-32242318IPR003657WRKY domain
SuperFamilySSF1182902.48E-27249318IPR003657WRKY domain
PROSITE profilePS5081128.828252318IPR003657WRKY domain
SMARTSM007742.2E-36257317IPR003657WRKY domain
PfamPF031067.8E-27258316IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MENKPILGDE EEKTIKPSSS SEENHDFIAI NNKEENQSHV KQEDDNSKVW ISKKDNSTII  60
KEQEKEIESA KAKMGEVKEE NERLKLLLCQ IVKDYQSLHT RFLDVLKKEE ANKSTTTPIV  120
GSHEENNEEH HQLISLSLGR SSSNDPPKKQ EKKSSKEEDD DDDDDGKHGN DGGGGLELGL  180
ECKFEPDGSI ESEKNNNPSC ESSLGKPEEE EKEPTEVWPP SKILKSVKNG DEEDVSEPMQ  240
LKKTRVSVRT RCDTPTMNDG CQWRKYGQKI AKGNPCPRAY YRCTLSPTCP VRKQVQRCSD  300
DMSILITTYE GNHNHPLPLS ATAMASTTSA AASMLHSQSS TSQPALPTSL SAPTASFSTS  360
TTHLHALSFN FSQNPIPSHH YHFPNSSIST LNSHPTVTLD LTAPPSPHNN YPSYFSRFSN  420
LPTSSSSSSS SSSSSSCLNW KKTSSHLTFG RPLNNYPAIR QSPPYMQITN HQALSETLTA  480
AATKAITSNP SFCSALASAL TSFVGNNGGS GGTASELGFA SSSYLQGSKP SSMVNPPHQQ  540
QKQGSLLLFP PSNTASDPPA D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20244318174WRKY transcription factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ9080950.0DQ908095.1 Gossypium hirsutum clone LIB5327-041-A1-N1-E10_PS_Gh153 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016703951.10.0PREDICTED: probable WRKY transcription factor 61
TrEMBLA0A1U8KN990.0A0A1U8KN99_GOSHI; probable WRKY transcription factor 61
STRINGGorai.013G082300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2244145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18860.17e-57WRKY DNA-binding protein 61