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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D13G0634 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 163aa MW: 19513.8 Da PI: 10.169 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 46.5 | 4.6e-15 | 6 | 55 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 kr+ n++ r t+ kR++ +lK A ELS L ++v +++fs+tg++ ++ Gh_D13G0634 6 KRSGNSRSRRMTYVKRKESVLKQAAELSMLYHIDVGLMMFSPTGQFTSFA 55 7899******************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.7E-7 | 1 | 57 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 14.97 | 4 | 58 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.58E-17 | 4 | 75 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.1E-13 | 10 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.3E-5 | 20 | 35 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.3E-5 | 35 | 56 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MAEKMKRSGN SRSRRMTYVK RKESVLKQAA ELSMLYHIDV GLMMFSPTGQ FTSFAHKGRV 60 EDIFLRYFDH NDEHKECRLK YEAEILDKLG RYHALERKLT DLNWKKYEAE DKMRSYNPDM 120 TKILTISEAV LHQQFVMDAI LRIEKIKSCL SKRFHLQSRM MLR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017617909.1 | 2e-95 | PREDICTED: agamous-like MADS-box protein AGL66 | ||||
TrEMBL | A0A0D2VAG7 | 1e-110 | A0A0D2VAG7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G071800.1 | 1e-111 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16598 | 6 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77980.1 | 9e-20 | AGAMOUS-like 66 |