PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G0605
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 490aa    MW: 56212.5 Da    PI: 7.8794
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G0605genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.21.6e-26279329151
                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                  krien++ rqvtfskRr+g+lKK +ELSvLCda++ +iifsstgk+  y++
  Gh_D13G0605 279 KRIENQTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKMCQYCT 329
                  79**********************************************986 PP
2K-box59.21.7e-20341428187
        K-box   1 yqkssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                  yqk +g++  e+ + e+l++ela L+ke++ Lq + R++ Ged++s+ ++eL qLeq+Le+s++k+R++K+++l e+ +++ +  +e+
  Gh_D13G0605 341 YQKVTGTRiPEHDNREHLYNELAVLRKETRLLQLSMRRYTGEDMSSMPYEELDQLEQELERSVNKVRERKERMLEEENNNMYRWIQEH 428
                  677888888888999**************************************************************99997766665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005584.0E-1327183IPR003347JmjC domain
PfamPF023731.4E-6110159IPR003347JmjC domain
SuperFamilySSF511971.04E-10112197No hitNo description
PROSITE profilePS5006629.801271331IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-38271330IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-30272350IPR002100Transcription factor, MADS-box
CDDcd002654.95E-40272346No hitNo description
PRINTSPR004042.6E-26273293IPR002100Transcription factor, MADS-box
PROSITE patternPS003500273327IPR002100Transcription factor, MADS-box
PfamPF003194.9E-23280327IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-26293308IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-26308329IPR002100Transcription factor, MADS-box
PfamPF014868.8E-17351423IPR002487Transcription factor, K-box
PROSITE profilePS5129712.445355446IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MMEVNVLVHA AEVNLKGEQL ASIMKLKERH HVQDLKEIFG MKKKVDRVQP AGYSTQNGTS  60
SARVSKLEDS AVEDVQGGCF PERRCSQAKG LSNKHFREFR HIHCSPVPRV VDPIHGQSFS  120
LTLDHKSKLK AEYGIEPWTF VQKLGEAVLI PAGCPYQSFV NVALNFVSPE SVGECIRLTE  180
EYRVLPQGHS AKVDKLKIAR VLQIVAKKKE ILEMAKIQDF QAFVNGCGDY PLKLMKPSVP  240
CSPLNPNIDF NQTCEFEDFC VGVNVVFLLN MGRGKIAIKR IENQTTRQVT FSKRRAGLLK  300
KTHELSVLCD AQIGLIIFSS TGKMCQYCTQ PYRMEQIIER YQKVTGTRIP EHDNREHLYN  360
ELAVLRKETR LLQLSMRRYT GEDMSSMPYE ELDQLEQELE RSVNKVRERK ERMLEEENNN  420
MYRWIQEHRA AIEYQQQGGL EAKPVEHHQQ VLDEFPFYGE PSSVLQLATI PQQFSYQLQL  480
AQPNLQDSNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A9e-17271341169MEF2 CHIMERA
6bz1_B9e-17271341169MEF2 CHIMERA
6bz1_C9e-17271341169MEF2 CHIMERA
6bz1_D9e-17271341169MEF2 CHIMERA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.192280.0boll| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1556610.0KC155661.1 Gossypium hirsutum MADS box protein MADS66 mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65062543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.31e-76MIKC_MADS family protein