PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D13G0472 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 239aa MW: 27493.2 Da PI: 9.6962 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 79.4 | 2.5e-25 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ie +s rqvtfskRrng+lKKA+EL +LCdaev +iifsst kl+ ++s Gh_D13G0472 9 KKIEKSSSRQVTFSKRRNGLLKKAKELAILCDAEVGLIIFSSTSKLHHFAS 59 68**********************************************986 PP | |||||||
2 | K-box | 82.9 | 7.1e-28 | 83 | 172 | 10 | 99 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +++ + +++e+a L+++++ Lq+ qR+l+G++L+ Ls+k+Lq Le+qL+ slk++R +K+++l++qi+el +k + +++en + +kkl+ Gh_D13G0472 83 PASELKFWKKEVASLRQQLNDLQECQRQLMGKELSGLSFKDLQGLENQLQMSLKRVRMRKDQILTNQIDELNRKGHHIHQENLEVHKKLD 172 567899********************************************************************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.9E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.216 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.03E-43 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 2.49E-32 | 2 | 79 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.8E-26 | 85 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.561 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MGRGKIEIKK IEKSSSRQVT FSKRRNGLLK KAKELAILCD AEVGLIIFSS TSKLHHFASS 60 SMNSVIERYN KYKEENHHQL LDPASELKFW KKEVASLRQQ LNDLQECQRQ LMGKELSGLS 120 FKDLQGLENQ LQMSLKRVRM RKDQILTNQI DELNRKGHHI HQENLEVHKK LDLICHENTE 180 LQKKVNGNGT EEANEGSKSL SHSYGFNNGY DYLQAPVVDL RLSQPQQLPD ADTSNLKTR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 5e-22 | 1 | 74 | 1 | 74 | MEF2C |
5f28_B | 5e-22 | 1 | 74 | 1 | 74 | MEF2C |
5f28_C | 5e-22 | 1 | 74 | 1 | 74 | MEF2C |
5f28_D | 5e-22 | 1 | 74 | 1 | 74 | MEF2C |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14701936}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012463563.1 | 1e-172 | PREDICTED: MADS-box transcription factor 23-like | ||||
Swissprot | Q6EP49 | 1e-80 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | A0A0D2TVT5 | 1e-171 | A0A0D2TVT5_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G053800.1 | 1e-171 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM530 | 24 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 6e-76 | AGAMOUS-like 16 |
Publications ? help Back to Top | |||
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