PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D13G0406

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 266aa MW: 29433.1 Da PI: 7.1335

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D13G0406	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.9	1.6e-12	59	106	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h Er RR+++++ f++L llP++ s+K +K++i+ +Av++I+ L+ Gh_D13G0406 59 MHIWTERERRKKMRNMFSNLHALLPHL----SPKADKSTIVDEAVKHIQTLE 106 56678*******************9....9***************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.7E-14	54	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.141	55	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.1E-14	58	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.16E-11	58	110	No hit	No description
Pfam	PF00010	6.3E-10	60	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.9E-7	63	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	6.65E-4	189	232	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MSATPGSFFL CENHPFPPPS NNNSGGGGAN GSEDNNQHEK QPLQDSTNNK RGGESDHEMH 60 IWTERERRKK MRNMFSNLHA LLPHLSPKAD KSTIVDEAVK HIQTLEKTLQ KLQKQKLDRL 120 QEGPNPIDLG HQDTSREAFM ADQVLSGNDA AAKDLIIKSN SVTVAQPRLQ FQTWTSSNVV 180 LNICGKEAQI SVCSPKKPGL FTSVCCILEK HYLEVISAHV SSQSNRSIFM IQAHQVGSSG 240 AYNHQVSEVD EIFKQAAAEI MFCLTS

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX590353	1e-133	JX590353.1 Gossypium hirsutum clone NBRI_GE25251 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012465876.1	0.0	PREDICTED: transcription factor bHLH95-like isoform X1
TrEMBL	A0A0D2VAJ0	0.0	A0A0D2VAJ0_GOSRA; Uncharacterized protein
STRING	Gorai.013G045100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5074	25	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	1e-46	bHLH family protein