PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G0362
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 345aa    MW: 39625.2 Da    PI: 9.6785
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G0362genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3505.3e-16595197
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                 ff +l+ s +l+++ l++p +f++++  +   s+   l+ ++g +W+v +  +k ++++++++GW+eF +   +++g ++vF+++g+s f   v++f
  Gh_D13G0362  5 FFHKLILSTTLQEKKLRIPDNFVKKFRDE--LSVAAALTVPDGHVWRVGI--KKVDNKVWFQEGWQEFLERYYIRVGYVLVFRYEGNSAF--SVSIF 95
                 788999999**************999755..999****************..**********************************9999..88887 PP
2B364.51.7e-20243333498
                  E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  vl ps+  + ++++lp  fae+h +g+   s  ++l+ ++gr+W+v++  r k+g+  +++GW eF  +n+L egD++vF+l +++e  l+v+vfr
  Gh_D13G0362 243 VLRPSYLYRGCIMYLPSCFAEKHlSGV---SDSIKLQLPDGRQWSVRC--RYKGGKAKFSRGWYEFTLENNLGEGDVCVFELLRSREIVLKVTVFR 333
                  78899******************8666...336***************..667777779**********************999888889999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-21396IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.61E-21396IPR015300DNA-binding pseudobarrel domain
CDDcd100178.49E-18596No hitNo description
PfamPF023627.2E-13595IPR003340B3 DNA binding domain
PROSITE profilePS5086313.521598IPR003340B3 DNA binding domain
SMARTSM010191.2E-12698IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-24232333IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-23234333IPR015300DNA-binding pseudobarrel domain
CDDcd100171.79E-23238333No hitNo description
SMARTSM010196.2E-21240335IPR003340B3 DNA binding domain
PROSITE profilePS5086314.142240335IPR003340B3 DNA binding domain
PfamPF023623.1E-18243333IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MPRPFFHKLI LSTTLQEKKL RIPDNFVKKF RDELSVAAAL TVPDGHVWRV GIKKVDNKVW  60
FQEGWQEFLE RYYIRVGYVL VFRYEGNSAF SVSIFNLYNS EINYQTNALV GTQYNHGKQY  120
PFEQLEDDEC ISPALQNLFG GSKLNNCINW GGDANLQTSK GVNNQPIRGS GAMKPEPKKR  180
GRKRKFDPNV QDSSAGREDD ADMRLRCYES ASARKRTVTA EERERAINAA KAFEPINPFC  240
RVVLRPSYLY RGCIMYLPSC FAEKHLSGVS DSIKLQLPDG RQWSVRCRYK GGKAKFSRGW  300
YEFTLENNLG EGDVCVFELL RSREIVLKVT VFRVLESGGL MHRSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-6920833617144B3 domain-containing transcription factor VRN1
4i1k_B2e-6920833617144B3 domain-containing transcription factor VRN1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and at lower levels in aerial parts. {ECO:0000269|PubMed:12114624}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012462595.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2
RefseqXP_016745121.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2
SwissprotQ8L3W11e-151VRN1_ARATH; B3 domain-containing transcription factor VRN1
TrEMBLA0A0D2VAA80.0A0A0D2VAA8_GOSRA; Uncharacterized protein
TrEMBLA0A1U8P1N30.0A0A1U8P1N3_GOSHI; B3 domain-containing transcription factor VRN1-like isoform X2
TrEMBLA0A2P5RSY00.0A0A2P5RSY0_GOSBA; Uncharacterized protein
STRINGGorai.013G040000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112428103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-147B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Kumar A,Singh A,Panigrahy M,Sahoo PK,Panigrahi KCS
    Carbon nanoparticles influence photomorphogenesis and flowering time in Arabidopsis thaliana.
    Plant Cell Rep., 2018. 37(6): p. 901-912
    [PMID:29541883]