PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G0346
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 363aa    MW: 40909.9 Da    PI: 5.7853
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G0346genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.7e-12189242154
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +++ hn+ Er RR ++  a+  L  llP++s +++k+ s a i  +AveYI +L
  Gh_D13G0346 189 KKQEHNAKERIRRIKLHAAYLALGALLPSDSTGSKKRKSTALIIDRAVEYIPEL 242
                  6899*************************85555555**************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-11186253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.563188242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-9188260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-9189243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-7194248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MSSLHLENLF SIPEATDEYL WPLTQDNKDD GKNFSASIQT DGHQCSSSSS QAVMDNVNGN  60
KLDPVLALDQ GIPALLSDYT IEDNARTGDQ LGTTSKFILE SVDHNIVGES MQSILDYPID  120
VSLSAPLEDL DDIDLVPHES SSRQLPSTYQ ETRDAHINAK RISSKTRGRN HRFKQGLNME  180
DYGEGTTMKK QEHNAKERIR RIKLHAAYLA LGALLPSDST GSKKRKSTAL IIDRAVEYIP  240
ELEKEIEKLT LRKNDMLSAI KNKKSCAVLN HFQLRQPSVS VHEIKQGEFI VQICTQEYPD  300
CSFLNLLHNV EEEEEGICII SASTHRVSDH GHCYHLHIQQ MHERLDGENH IASLREKVIS  360
WLC
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6145441e-170JX614544.1 Gossypium hirsutum clone NBRI_GE58013 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016704073.10.0PREDICTED: uncharacterized protein LOC107919056
RefseqXP_016704075.10.0PREDICTED: uncharacterized protein LOC107919056
TrEMBLA0A1U8KNQ90.0A0A1U8KNQ9_GOSHI; uncharacterized protein LOC107919056
STRINGGorai.013G038100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105582234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71200.19e-18bHLH family protein