PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Gh_D13G0314

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TALE

Protein Properties

Length: 625aa MW: 69454.1 Da PI: 5.9628

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D13G0314	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.5	2.6e-09	373	410	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gLt +qV++WF N R + Gh_D13G0314 373 FEHflHPYPKDSDKIMLARQTGLTRSQVSNWFINARVR 410 664459******************************88 PP
2	BELL	128.7	2.1e-41	235	306	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+k +kLls+l+eVd+rYkqy++q+q+v+ssF+a+ag+g++kpYt+lAl++iSrhFrcL+dai +q+ Gh_D13G0314 235 ERQELQSKLTKLLSMLDEVDRRYKQYYHQMQIVVSSFDAIAGCGASKPYTALALQTISRHFRCLRDAINGQV 306 79*******************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	7.3E-64	158	304	IPR006563	POX domain
Pfam	PF07526	5.4E-52	164	302	IPR006563	POX domain
PROSITE profile	PS50071	12.163	351	414	IPR001356	Homeobox domain
SMART	SM00389	1.0E-9	354	418	IPR001356	Homeobox domain
CDD	cd00086	1.01E-12	354	415	No hit	No description
SuperFamily	SSF46689	2.69E-17	355	421	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.2E-29	357	420	IPR009057	Homeodomain-like
Pfam	PF05920	4.2E-18	371	410	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 625 aa Download sequence Send to blast
MASYYTGSDN QRDTAPMIYL RESMPGSFLE GPVLPGNTML YMSSGSYSDA FAGNSQQQNK 60 CVEIPTVEAA TSQQQQILSN MGGLREQDFS GWRDGRNEML AMHLMGSTSG ISHDGQNLQG 120 QGLSLSLGTQ IPYRNPGSGF SSVSRESNKG ELSAFGMSSM VRTIPNSKYL KAAQQLLDEV 180 VNVQKALKQP DGEKNRNSLE NRVKSSKEDD GGSKNVPANQ QESSINSPKE LSHAERQELQ 240 SKLTKLLSML DEVDRRYKQY YHQMQIVVSS FDAIAGCGAS KPYTALALQT ISRHFRCLRD 300 AINGQVQATR TSLGELDASE NSKELRITRL RYVDQQLRQQ RALQQFGMMQ QHAWRPQRGL 360 PESSVSILRA WLFEHFLHPY PKDSDKIMLA RQTGLTRSQV SNWFINARVR LWKPMVEEMY 420 KEEFDAEMDS NSSSDNVVKA ATKGDTMTSE DRGEDLQQSG SSSVTERCSN GQLMDSKSEN 480 VHNADISGST IGAGFLNASC GEAETEYMLQ TLREEQRLTM DDSNIFPDTS VHLDGGSHRF 540 MAASGYNVSE LGRFGSGVSL TLGLQHYEDG SISMSGGSHH QNFVAMRGDD MYNHIPTETG 600 DFECMNPSNR QHRLSSSQLL HDFVA

Sequence ? help Back to Top

Protein Sequence Length: 625 aa Download sequence Send to blast

MASYYTGSDN QRDTAPMIYL RESMPGSFLE GPVLPGNTML YMSSGSYSDA FAGNSQQQNK  60
CVEIPTVEAA TSQQQQILSN MGGLREQDFS GWRDGRNEML AMHLMGSTSG ISHDGQNLQG  120
QGLSLSLGTQ IPYRNPGSGF SSVSRESNKG ELSAFGMSSM VRTIPNSKYL KAAQQLLDEV  180
VNVQKALKQP DGEKNRNSLE NRVKSSKEDD GGSKNVPANQ QESSINSPKE LSHAERQELQ  240
SKLTKLLSML DEVDRRYKQY YHQMQIVVSS FDAIAGCGAS KPYTALALQT ISRHFRCLRD  300
AINGQVQATR TSLGELDASE NSKELRITRL RYVDQQLRQQ RALQQFGMMQ QHAWRPQRGL  360
PESSVSILRA WLFEHFLHPY PKDSDKIMLA RQTGLTRSQV SNWFINARVR LWKPMVEEMY  420
KEEFDAEMDS NSSSDNVVKA ATKGDTMTSE DRGEDLQQSG SSSVTERCSN GQLMDSKSEN  480
VHNADISGST IGAGFLNASC GEAETEYMLQ TLREEQRLTM DDSNIFPDTS VHLDGGSHRF  540
MAASGYNVSE LGRFGSGVSL TLGLQHYEDG SISMSGGSHH QNFVAMRGDD MYNHIPTETG  600
DFECMNPSNR QHRLSSSQLL HDFVA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	1e-16	360	417	1	58	Homeobox protein Meis1
4xrs_B	1e-16	360	417	1	58	Homeobox protein Meis1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016704896.1	0.0	PREDICTED: BEL1-like homeodomain protein 6
Swissprot	O65685	1e-157	BLH6_ARATH; BEL1-like homeodomain protein 6
TrEMBL	A0A1U8KQZ9	0.0	A0A1U8KQZ9_GOSHI; BEL1-like homeodomain protein 6
STRING	Gorai.013G034600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2869	25	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34610.2	1e-146	BEL1-like homeodomain 6

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Cassan-Wang H, et al. Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis. Front Plant Sci, 2013. 4: p. 189 [PMID:23781226]