PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 219aa MW: 24226.2 Da PI: 7.1396

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D13G0226	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65.3	1.2e-20	72	122	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr++ +g+WvAeIr+p+ k kr +lg+f ta++Aa a+++a+k ++ge Gh_D13G0226 72 IYRGVRQRT-WGKWVAEIRVPN---KGKRLWLGTFPTAFQAALAYDEAAKTMYGE 122 6***999.******93...25***********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.0E-14	71	122	IPR001471	AP2/ERF domain
CDD	cd00018	8.46E-29	71	130	No hit	No description
SuperFamily	SSF54171	2.03E-20	72	130	IPR016177	DNA-binding domain
SMART	SM00380	1.6E-33	72	135	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.391	72	129	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-9	73	84	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.1E-29	73	130	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-9	95	111	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MGFSENQNPN VGIPLFLDSS RKRKRRNGLS VADTLKQWSE NSDTKKALKP PAKGSKKGCM 60 KGKGGPQNQN CIYRGVRQRT WGKWVAEIRV PNKGKRLWLG TFPTAFQAAL AYDEAAKTMY 120 GEKAILNMPH GSDTTTTTSA SSESTTATAS DVKAEVREEA KVLAEEDESM KEMDYSWLNG 180 LEFKDDIALN CGANNNISVW DGGWLFNEDD CFSIDELLG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	7e-18	61	130	3	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	20	25	RKRKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269\|PubMed:11798174}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269\|PubMed:11798174}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012461862.1	1e-163	PREDICTED: dehydration-responsive element-binding protein 2A-like
Swissprot	Q8LFR2	3e-46	DRE2C_ARATH; Dehydration-responsive element-binding protein 2C
TrEMBL	A0A0D2W271	1e-162	A0A0D2W271_GOSRA; Uncharacterized protein
TrEMBL	A0A2P5PV47	1e-162	A0A2P5PV47_GOSBA; Uncharacterized protein
STRING	Gorai.013G025100.1	1e-162	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8532	25	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05410.2	8e-36	DRE-binding protein 2A

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sazegari S,Niazi A,Ahmadi FS A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes. Bioinformation, 2015. 11(2): p. 101-6 [PMID:25848171] Huang KC,Lin WC,Cheng WH Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. BMC Plant Biol., 2018. 18(1): p. 40 [PMID:29490615] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]