PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G0207
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 262aa    MW: 30128 Da    PI: 9.3647
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G0207genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.11e-051652041155
                  HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  rR +++ +++  L++l+ +      +K + a++L++A  YIk Lq
  Gh_D13G0207 165 RRSQKLSDKITALQKLVSPY-----GKTDTASVLQEASLYIKLLQ 204
                  7999**************99.....9****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.734154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.38E-4165208No hitNo description
SuperFamilySSF474599.42E-11165221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-8169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MRKAAHLSPL SSQFYNIGNS EAQMPYLDVL MQMESKGNVN GDAFSMEPKI FYNDNQIRDG  60
AFAIPYQSHF NSNFLQDYEY GSSNFDNNFQ QSMSLSSKLA IPYLESESIQ NGRKREIEFN  120
NDPNTALDER NKNKRKKLLT SFEQSHRSSQ ERTEIKDFRL NMPVRRSQKL SDKITALQKL  180
VSPYGKTDTA SVLQEASLYI KLLQEQIQML SSSYKSLRAI HPQEIGKKQQ DLKSRGLCLV  240
PISFTQRVAK EEQSSLEILN NM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.193700.0boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016665556.10.0PREDICTED: transcription factor bHLH114-like isoform X2
TrEMBLA0A1U8HHI30.0A0A1U8HHI3_GOSHI; transcription factor bHLH114-like isoform X2
STRINGGorai.013G023000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17246610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31050.12e-22bHLH family protein